FASTA BLAST Scan

FASTA BLAST Scan is a program for processing nucleotide sequences alignment made with FASTA and BLAST alignment tools.

FASTA BLAST Scan is released under the GNU General Public License (GPL)
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FASTA BLAST Scan's features

Input

FASTA BLAST Scan can process two types of nucleotide alignment:

FASTA Alignment example
BLAST Alignment example

FASTA BLAST Scan is compatible with the following versions of FASTA and BLAST:

FASTA program from "Pearson package" at ftp://ftp.virginia.edu/pub/fasta (versions 3.1, 3.2, 3.3t07 and 3.4t10)

BLASTN from NCBI server (http://www.ncbi.nlm.nih.gov/BLAST/) (version 2.2.25+)

The maximum number of sequences in alignment is 10000.

Output

The selected sequences can be saved in:

Multi-sequence FASTA format that can be directly aligned with the CLUSTALW program
Example

Query anchored format
Example

FASTA_BLAST Scan screenshot

Download

The current version is 2.4

FASTA BLAST Scan for Microsoft-Windows (zip file - (376 Kb))

md5sum: 71869d025445d427ff5d10bbf382ff36

FASTA BLAST Scan for Microsoft-Windows (auto-install file - (619 Kb))

md5sum: 986e5fdd1af0de01e2e0b1bdb1a6ac75

Sources of FASTA BLAST Scan (zip file - (27 Kb))

md5sum: 4adefcb8b4dd9d00ff88e031155af248

To install FASTA BLAST Scan for Microsoft-Windows, extract the files from the ZIP archive.
To run FASTA BLAST Scan, click twice the "fasta_blast_scan-2.4.exe" file.

System's requirement

FASTA BLAST Scan for Microsoft Windows runs under Windows 95/98/98SE/ME/NT4/2000/XP/2003/7/2008

Contacts

For any bug report, comment or suggestion:

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