The features of the AnnHyb v.4 are:

• Oligonucleotide analysis screenshot
  
  • Degenerated oligonucleotide allowed (IUB code for base degeneration)
  • Align oligonucleotides with sequences (Smith-Waterman based algorithm)
  • Revert/complement oligonucleotides
  • Melting temperature determination (nearest neighbors algorithm)
  • Molecular weigth determination
  • GC% determination
  • Molar extinction coefficient determination
  • Hairpin/loop analysis
  
  
• Sequence viewer and sequence editor screenshot
  
  
• Multi-alignment viewer screenshot
  
  
• Consensus determination from multi-alignment screenshot
  
  
• Sequence retrieving from server (even through Proxy server) screenshot
  
  
• Sequence annotations manager screenshot
  
  
• Sequence format conversion
  • Input: Genbank, EMBL, GCG, RSF, FASTA, Plaintext, GFF
  • Output: FASTA (single or multi-sequence format), XML, GCG, RSF
  
  
  
• Restriction analysis (restriction enzymes from REBASE included) screenshot
  
  
• Translation output example
  
  
• Sub-sequence search (Smith-Waterman based algorithm)
  
  
• Reverse/complement sequence
  
  
• Sequence statistics
  • Base composition output example
  • Codon usage output example
  
  
• ORF finding
  
  
• Crypt/decrypt sequence for storage security
  
  
  

since April 8, 2003

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