#!/bin/bash #cd /http/R-custom/bin ## cd /home/sources.programs/R-patched/bin #cd /home/sources.programs/R-devel/bin # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/aws*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/Rmpi*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/papply*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/sma*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/GDD*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/gridBase*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/convert*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/colorspace*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/hexbin*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/RColorBrewer*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/rlecuyer_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/DBI_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/RSQLite_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/Biobase*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/DynDoc*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/widgetTools*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/tkWidgets*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/Biostrings*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/affyio_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/affy_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/matchprobes_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/gcrma_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/affydata_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/affyPLM*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/genefilter_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/limma_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/multtest*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/marray_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/vsn_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/waveslim_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/xtable_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/zoo_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/sandwich_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/strucchange_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/annotate_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/geneplotter_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/pixmap_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/tilingArray_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/DNAcopy*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/cgh_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/aCGH_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/arrayQuality_*gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/cghMCR_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/GLAD_*gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/snapCGH_*gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/Hmisc_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/rsprng_*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/combinat*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/snow*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/R2HTML*.gz # ## just in case a few things did not work # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/DynDoc*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/widgetTools*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/marray*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/genefilter*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/tilingArray*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/arrayQuality*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/cghMCR*.gz # ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/snapCGH*.gz #### If you need BioC-2.1 uncomment lines below and comment all above ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/aws*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/Rmpi*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/papply*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/sma*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/GDD*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/gridBase*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/convert*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/colorspace*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/hexbin*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/RColorBrewer*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/rlecuyer_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/DBI_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/RSQLite_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/xtable_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/Biobase*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/DynDoc*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/widgetTools*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/tkWidgets*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/Biostrings*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/AnnotationDbi_* ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/preprocessCore*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/affyio_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/affy_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/matchprobes_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/gcrma_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/affydata_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/affyPLM*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/annotate_* ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/genefilter_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/limma_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/multtest*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/marray_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/vsn_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/waveslim_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/zoo_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/sandwich_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/strucchange_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/annotate_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/geneplotter_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/pixmap_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/tilingArray_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/DNAcopy*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/cgh_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/aCGH_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/arrayQuality_*gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/cghMCR_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/GLAD_*gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/snapCGH_*gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/Hmisc_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/rsprng_*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/combinat*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/snow*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/R2HTML*.gz ## just in case a few things did not work ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/DynDoc*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/widgetTools*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/marray*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/genefilter*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/tilingArray*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/arrayQuality*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/cghMCR*.gz ./R CMD INSTALL ~/bzr-local-repos/adacgh-required-packs/BioC-2.1/snapCGH*.gz