#!/usr/bin/python
import sys
import os
import cgi
import types
import time
import shutil
import re
import tarfile
import glob
from stat import ST_SIZE
import cgitb
cgitb.enable() ## zz: eliminar for real work?
sys.stderr = sys.stdout
ACE_MAX_time = 2 * 3600 ## 4 hours is max duration allowd for any process
### There are lots of ugly hacks here. Could turn into a module many of the
### functions below _if_ they took parameters (instead of just getting things
### from the global environment.
def commonOutput():
print "Content-type: text/html\n\n"
print """
ADaCGH
"""
## For redirections, from Python Cookbook
def getQualifiedURL(uri = None):
""" Return a full URL starting with schema, servername and port.
*uri* -- append this server-rooted uri (must start with a slash)
"""
schema, stdport = ('http', '80')
host = os.environ.get('HTTP_HOST')
if not host:
host = os.environ.get('SERVER_NAME')
port = os.environ.get('SERVER_PORT', '80')
if port != stdport: host = host + ":" + port
result = "%s://%s" % (schema, host)
if uri: result = result + uri
return result
def getScriptname():
""" Return te scriptname part of the URL."""
return os.environ.get('SCRIPT_NAME', '')
def getBaseURL():
""" Return a fully qualified URL to this script. """
return getQualifiedURL(getScriptname())
def relaunchCGI():
print "Content-type: text/html\n\n"
print """
"""
print ''
print 'ADaCGH results'
print ' '
print ' This is an autorefreshing page; your results will eventually be displayed here.\n'
print 'If your browser does not autorefresh, the results will be kept for five days at
'
print '', 'http://adacgh2.bioinfo.cnio.es/tmp/'+ newDir + '/results.html.'
print '
'
def valueNumUpload(fieldName, testNumber = 'float', minValue = 0):
"""Upload and get the values and do some checking. For text and radio selections
with positive numeric data.
We assume there is an existing call to fs = cgi.FieldStorage()"""
if not fs.has_key(fieldName):
shutil.rmtree(tmpDir)
commonOutput()
print " ADaCGH ERROR
"
print " ", fieldName, "value required
"
print " Please fill up the required fields and try again
"
print ""
sys.exit()
if fs[fieldName].filename:
shutil.rmtree(tmpDir)
commonOutput()
print " ADaCGH ERROR
"
print " ", fieldName, "should not be a file.
"
print " Please fill up the required fields and try again
"
print "