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Class: affine_penalty Bio/Align/support.py

affine_penalty(open, extend[, count_first]) -> gap_fn

Create a gap function for use in an alignment.

Methods   
__call__
__init__
  __call__  
__call__ (
        self,
        length,
        sequence,
        index,
        )
  __init__  
__init__ (
        self,
        open,
        extend,
        count_first=0,
        )
Exceptions   
ValueError, "Gap penalties should be negative."

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