blast_cutoff ( self,  line )

database_length ( self,  line )

dropoff_1st_pass ( self,  line )

effective_database_length ( self,  line )

effective_hsp_length ( self,  line )

effective_query_length ( self,  line )

effective_search_space ( self,  line )

effective_search_space_used ( self,  line )

end_parameters ( self )

frameshift ( self,  line )

gap_penalties ( self,  line )

gap_trigger ( self,  line )

gap_x_dropoff ( self,  line )

gap_x_dropoff_final ( self,  line )

hsps_gapped ( self,  line )

hsps_no_gap ( self,  line )

hsps_prelim_gapped ( self,  line )

hsps_prelim_gapped_attempted ( self,  line )

matrix ( self,  line )

num_extends ( self,  line )

num_good_extends ( self,  line )

num_hits ( self,  line )

num_seqs_better_e ( self,  line )

num_sequences ( self,  line )

query_length ( self,  line )

start_parameters ( self )

threshold ( self,  line )

window_size ( self,  line )