Holds information about the parameters.
Members:
matrix Name of the matrix.
gap_penalties Tuple of (open, extend) penalties. (floats)
num_hits Number of hits to the database. (int)
num_sequences Number of sequences. (int)
num_good_extends Number of extensions. (int)
num_seqs_better_e Number of sequences better than e-value. (int)
hsps_no_gap Number of HSP's better, without gapping. (int)
hsps_prelim_gapped Number of HSP's gapped in prelim test. (int)
hsps_prelim_gapped_attemped Number of HSP's attempted in prelim. (int)
hsps_gapped Total number of HSP's gapped. (int)
query_length Length of the query. (int)
database_length Number of letters in the database. (int)
effective_hsp_length Effective HSP length. (int)
effective_query_length Effective length of query. (int)
effective_database_length Effective length of database. (int)
effective_search_space Effective search space. (int)
effective_search_space_used Effective search space used. (int)
frameshift Frameshift window. Tuple of (int, float)
threshold Threshold. (int)
window_size Window size. (int)
dropoff_1st_pass Tuple of (score, bits). (int, float)
gap_x_dropoff Tuple of (score, bits). (int, float)
gap_x_dropoff_final Tuple of (score, bits). (int, float)
gap_trigger Tuple of (score, bits). (int, float)
blast_cutoff Tuple of (score, bits). (int, float)
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