Martel based parser to read NBRF formatted files.

This is a huge regular regular expression for CDD, built using the regular expressiona on steroids capabilities of Martel.

http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml

Notes: Just so I remember -- the new end of line syntax is: New regexp syntax - \R \R means "\n|\r\n?" [\R] means "[\n\r]"

This helps us have endlines be consistent across platforms.

out_multiline ( multiline )

output_dict ( dict,  level=0 )

output_list ( items,  level=0 )