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Module: cdd_format Bio/CDD/cdd_format.py

Martel based parser to read CDD formatted files.

This is a huge regular regular expression for CDD, built using the regular expressiona on steroids capabilities of Martel.

http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml Notes: Just so I remember -- the new end of line syntax is: New regexp syntax - \R \R means "\n|\r\n?" [\R] means "[\n\r]"

This helps us have endlines be consistent across platforms.

# standard library http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml

Imported modules   
import Martel
from Martel import RecordReader, Str, AnyEol, ToEol, Group, Alt, Opt, Rep, Rep1, Any, AnyBut, Assert, AssertNot
import string

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