Table of Contents

Class: ClustalAlignment Bio/Clustalw/__init__.py

Work with the clustal aligment format.

This format is the default output from clustal
these files normally have an extension of .aln.
Base Classes   
Alignment
Methods   
__init__
__str__
_add_star_info
_add_version
  __init__ 
__init__ ( self,  alphabet=Alphabet.Gapped( IUPAC.ambiguous_dna ) )

  __str__ 
__str__ ( self )

Print out the alignment so it looks pretty.

The output produced from this should also be formatted in valid clustal format.

  _add_star_info 
_add_star_info ( self,  stars )

Add all of the stars, which indicate consensus sequence.

  _add_version 
_add_version ( self,  version )

Add the version information about the clustal file being read.


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