Handler to create a ClustalAlignment object from clustal file info.
This handler is used to accept events coming from a Martel parsing
stream, and acts like a normal SAX handler.
After parsing, the alignment object created is available as the
align attribute of the class.
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Methods
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__init__
characters
endDocument
endElement
startElement
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__init__
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__init__ ( self, alphabet )
Create a new handler ready to deal with output from Martel parsing.
Arguments:
o alphabet - The alphabet to create all of the new sequences with.
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characters
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characters ( self, content )
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endDocument
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endDocument ( self )
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endElement
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endElement ( self, name )
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startElement
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startElement (
self,
name,
attrs,
)
Check the various tags for the info we are interested in.
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