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Imported modules
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from Bio.Tools.Parsers.spark import GenericScanner, GenericParser
import string
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Functions
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_fixup_defs
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_fixup_defs ()
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_verify_subtypes
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_verify_subtypes (
subset,
total,
old_name,
new_name,
)
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Exceptions
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TypeError("%s can produce a %r value not accepted by %s" %( old_name, x.__name__, new_name ) )
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chomp
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chomp ( s, c )
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chompchomp
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chompchomp ( s, c )
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fixspaces
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fixspaces ( s )
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join_english
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join_english ( fields )
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join_fixspaces
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join_fixspaces ( lines )
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lchomp
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lchomp ( s, c )
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make_decoder
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make_decoder ( s )
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make_typechecked_decoder
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make_typechecked_decoder (
s,
input_types=None,
output_types=None,
)
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Exceptions
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TypeError("the input type includes %r which isn't supported by %s" %( x.__name__, f.name ) )
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parse
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parse ( tokens )
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safe_int
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safe_int ( s )
converts to int if the number is small, long if it's large
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scan
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scan ( input )
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test
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test ()
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tr
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tr (
s,
frm,
to,
)
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unescape_C
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unescape_C ( s )
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Classes
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