Module: __init_

Module: __init__

Bio/ECell/__init__.py

Imported modules

from Bio import File
from Bio.Align.Generic import Alignment
import Bio.Alphabet
from Bio.ParserSupport import EventGenerator, AbstractConsumer
import Martel
from Martel import RecordReader
import Record
import array
import copy
import ecell_format
import os
import re
import sgmllib
import string
import sys
import urlparse
from xml.sax import handler

Functions

_clear_bad_block
_is_valid_substance
_set_defaults
_set_reactor_defaults
is_only_digits

_clear_bad_block

_clear_bad_block ( block,  items )

_is_valid_substance

_is_valid_substance ( line_dict )

_set_defaults

_set_defaults ( line_dict )

_set_reactor_defaults

_set_reactor_defaults ( line_dict )

is_only_digits

is_only_digits ( line )

Classes

ECellError	message - description of error
Error
Iterator	Iterator interface to move over a file of ecell entries one at a time.
RecordParser	Parse ECell files into Record objects
_RecordConsumer	Create an ECell Record object from scanner generated information.
_Scanner	Start up Martel to do the scanning of the file.

Table of Contents

This document was automatically generated on Mon Jul 1 12:03:12 2002 by HappyDoc version 2.0.1