Module: Primer

Bio/Emboss/Primer.py

Code to interact with various Primer-related programs from EMBOSS.

Imported modules

from Bio.ParserSupport import AbstractConsumer, EventGenerator
import Martel
from Martel import RecordReader
import primer3_format
import primersearch_format
import string
from xml.sax import handler

Functions

_strip_and_combine

_strip_and_combine ( line_list )

Combine multiple lines of content separated by spaces.

Classes

Primer3Parser	Parse primer3 output into a Primer3Record.
Primer3Primers	A primer set designed by Primer3.
Primer3Record	Represent information from a primer3 run finding primers.
PrimerSearchAmplifier	Represent a single amplification from a primer.
PrimerSearchInputRecord	Represent the input file into the primersearch program.
PrimerSearchOutputRecord	Represent the information from a primersearch job.
PrimerSearchParser	Parse primersearch output into a PrimerSearchOutputRecord.
_Primer3RecordConsumer	Get output from prime3 into a Primer3Record
_Primer3Scanner	Scan output from the primer3 program.
_PrimerSearchRecordConsumer	Get output from primersearch into a PrimerSearchOutputRecord
_PrimerSearchScanner	Scan output from the primersearch program.

Table of Contents

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