Table of Contents

Class: _SequenceConsumer Bio/Fasta/__init__.py

Consumer that converts a FASTA record to a Sequence object.

Members: data Sequence with FASTA data.

Base Classes   
AbstractConsumer
Methods   
__init__
end_sequence
sequence
start_sequence
title
  __init__ 
__init__ (
        self,
        alphabet=Alphabet.generic_alphabet,
        title2ids=None,
        )

Initialize the Consumer.

Arguments: o alphabet - The alphabet of the sequences we will be creating. o title2ids - A function that will convert the title of a FASTA record into the id, name and description information.

  end_sequence 
end_sequence ( self )

  sequence 
sequence ( self,  line )

  start_sequence 
start_sequence ( self )

  title 
title ( self,  line )


Table of Contents

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