Table of Contents

Class: FormatIO Bio/FormatIO.py
Methods   
__init__
_find_builder
_get_file_format
convert
make_writer
read
readFile
readString
  __init__ 
__init__ (
        self,
        name,
        default_input_format=None,
        default_output_format=None,
        abbrev=None,
        registery=None,
        )

  _find_builder 
_find_builder (
        self,
        builder,
        resolver,
        )

  _get_file_format 
_get_file_format (
        self,
        format,
        source,
        )

  convert 
convert (
        self,
        infile=sys.stdin,
        outfile=sys.stdout,
        input_format=None,
        output_format=None,
        )

Exceptions   
TypeError( "Could not not determine file type" )
  make_writer 
make_writer (
        self,
        outfile=sys.stdout,
        format=None,
        )

  read 
read (
        self,
        systemID,
        format=None,
        builder=None,
        debug_level=0,
        )

  readFile 
readFile (
        self,
        infile,
        format=None,
        builder=None,
        debug_level=0,
        )

Exceptions   
AssertionError( format.multirecord )
TypeError( "Could not determine file type" )
  readString 
readString (
        self,
        s,
        format=None,
        builder=None,
        debug_level=0,
        )

Exceptions   
AssertionError( format.multirecord )
TypeError( "Could not determine file type" )

Table of Contents

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