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Module: Utilities Bio/HMM/Utilities.py

Generic functions which are useful for working with HMMs.

This just collects general functions which you might like to use in dealing with HMMs.

Imported modules   
import string
Functions   
pretty_print_prediction
  pretty_print_prediction 
pretty_print_prediction (
        emissions,
        real_state,
        predicted_state,
        emission_title="Emissions",
        real_title="Real State",
        predicted_title="Predicted State",
        line_width=75,
        )

Print out a state sequence prediction in a nice manner.

Arguments:

  • emissions -- The sequence of emissions of the sequence you are dealing with.

  • real_state -- The actual state path that generated the emissions.

  • predicted_state -- A state path predicted by some kind of HMM model.


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