|
KEGG Enzyme package
This module provides code to work with the KEGG Enzyme database.
Classes:
Record -- Holds the information from a KEGG Enzyme record.
Iterator -- Iterates through a file of KEGG Enzyme records.
Parser -- Parses KEGG Enzyme records into Record objects.
_Scanner
_Consumer
|
Imported modules
|
|
from Bio import File
from Bio.KEGG import _write_kegg, _wrap_kegg
from Bio.ParserSupport import AbstractConsumer, EventGenerator
import Martel
from Martel import RecordReader
import enzyme_format
from xml.sax import handler
|
|
Functions
|
|
_strip
|
|
|
_strip
|
_strip ( line_list )
Combine multiple lines of content separated by spaces.
This function is used by the EventGenerator callback function to
combine multiple lines of information. The lines are stripped to
remove whitespace.
|
|
Classes
|
|
| Iterator |
Iterator to read a file of KEGG Enzyme entries one at a time.
|
| Parser |
Parse KEGG Enzyme files into Record objects
|
| Record |
Holds info from a KEGG Enzyme record.
|
| _Consumer |
Create a KEGG Enzyme Record from scanner events.
|
| _Scanner |
Start up Martel to do the scanning of the file.
|
|
|