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Module: __init__ Bio/KEGG/__init__.py

KEGG package

This module provides code to work with data from the KEGG database.

References:

Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 29-34 (2000).

URL: http://www.genome.ad.jp/kegg/

Functions   
_wrap_kegg
_write_kegg
  _wrap_kegg  
_wrap_kegg (
        line,
        max_width=KEGG_DATA_LENGTH,
        wrap_rule=_default_wrap,
        )

Wraps the input line for KEGG output.

Arguments:

  • info - String holding the information we want wrapped for KEGG output. o max_width - Maximum width of a line. o wrap_rule - A wrap rule (see above) for deciding how to split strings that must be wrapped.

  _write_kegg  
_write_kegg (
        item,
        info,
        indent=KEGG_ITEM_LENGTH,
        )

Write a indented KEGG record item.

Arguments:

  • item - The name of the item to be written. o info - The (wrapped) information to write. o indent - Width of item field.

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