Module: __init_

Module: __init__

Bio/MetaTool/__init__.py

Imported modules

from Bio import File
from Bio.ParserSupport import EventGenerator, AbstractConsumer
from Bio.SeqFeature import Reference
import Martel
from Martel import RecordReader
import Matrix
import Record
import array
import copy
import metatool_format
import os
import re
import sgmllib
import string
import sys
import urlparse
from xml.sax import handler

Functions

_strip_and_combine

_strip_and_combine ( line_list )

Combine multiple lines of content separated by spaces.

This function is used by the EventGenerator callback function to combine multiple lines of information. The lines are first stripped to remove whitepsace, and then combined so they are separated by a space. This is a simple minded way to combine lines, but should work for most cases.

Classes

Iterator	Iterator interface to move over a file of MetaTool entries one at a time.
RecordParser	Parse MetaTool files into Record objects
_RecordConsumer	Create a MetaTool Record object from scanner generated information.
_Scanner	Start up Martel to do the scanning of the file.

Table of Contents

This document was automatically generated on Mon Jul 1 12:03:07 2002 by HappyDoc version 2.0.1