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Module: __init__ Bio/Ndb/__init__.py

Ndb

This module provides code to work with html files from http://ndbserver.rutgers.edu/NDB/structure-finder/ndb/index.html

Classes: Record Holds NDB sequence data. NdbParser Parses NDB sequence data into a Record object.

The algorithm is based on a state machine because the record has multiple sections and the handling of tags varies depending on the section. Citations have their own state machine.

Imported modules   
from Bio import File, Index
from Bio.Crystal import Hetero, Chain, Crystal
from Bio.ParserSupport import *
from Bio.SeqFeature import Reference
import UserDict
import sgmllib
import string
from types import *
import urllib
Functions   
_parse_constants
  _parse_constants  
_parse_constants ( text )
Classes   
NdbParser

Parses Ndb sequence data into a Record object.

Record

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