__init__ (
        self,
        seq_records,
        schema_evaluator,
        )

Initialize with sequences to evaluate.

Arguments:

• seq_records -- A set of SeqRecord objects which we use to calculate the fitness.

• schema_evaluator - An Schema class which can be used to evaluate find motif matches in sequences.

calculate_fitness ( self,  genome )

Calculate the fitness of a genome based on schema matches.

This bases the fitness of a genome completely on the number of times it matches in the set of seq_records. Matching more times gives a better fitness