__init__ (
        self,
        schemas,
        ambiguous_converter,
        )

Initialize the coder to convert sequences

Arguments:

• schema - A list of all of the schemas we want to search for in input sequences.

• ambiguous_converter - An Schema class which can be used to convert motifs into regular expressions for searching.

representation ( self,  sequence )

Represent the given input sequence as a bunch of motif counts.

Arguments:

• sequence - A Bio.Seq object we are going to represent as schemas.

This takes the sequence, searches for the motifs within it, and then returns counts specifying the relative number of times each motifs was found. The frequencies are in the order the original motifs were passed into the initializer.