The network is a directed multigraph with labeled edges. The nodes in the graph
are the biochemical species involved. The edges represent an interaction between
two species, and the edge label is a reference to the associated Interaction
object.
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Methods
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__init__
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__init__ ( self, species=[] )
Initializes a new Network object.
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__repr__
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__repr__ ( self )
Returns a debugging string representation of this network.
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__str__
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__str__ ( self )
Returns a string representation of this network.
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add_interaction
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add_interaction (
self,
source,
sink,
interaction,
)
Adds interaction to this network.
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add_species
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add_species ( self, species )
Adds species to this network.
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interactions
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interactions ( self )
Returns list of the unique interactions in this network.
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sink
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sink ( self, species )
Returns list of unique sinks for species.
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sink_interactions
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sink_interactions ( self, species )
Returns list of (sink, interaction) pairs for species.
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source
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source ( self, species )
Returns list of unique sources for species.
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source_interactions
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source_interactions ( self, species )
Returns list of (source, interaction) pairs for species.
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species
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species ( self )
Returns list of the species in this network.
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