Holds information from a Prosite record.

Members: name ID of the record. e.g. ADH_ZINC type Type of entry. e.g. PATTERN, MATRIX, or RULE accession e.g. PS00387 created Date the entry was created. (MMM-YYYY) data_update Date the primary data was last updated. info_update Date data other than primary data was last updated. pdoc ID of the PROSITE DOCumentation.

description Free-format description. pattern The PROSITE pattern. See docs. matrix List of strings that describes a matrix entry. rules List of rule definitions. (strings)

NUMERICAL RESULTS nr_sp_release SwissProt release. nr_sp_seqs Number of seqs in that release of Swiss-Prot. (int) nr_total Number of hits in Swiss-Prot. tuple of (hits, seqs) nr_positive True positives. tuple of (hits, seqs) nr_unknown Could be positives. tuple of (hits, seqs) nr_false_pos False positives. tuple of (hits, seqs) nr_false_neg False negatives. (int) nr_partial False negatives, because they are fragments. (int)

COMMENTS cc_taxo_range Taxonomic range. See docs for format cc_max_repeat Maximum number of repetitions in a protein cc_site Interesting site. list of tuples (pattern pos, desc.) cc_skip_flag Can this entry be ignored? cc_matrix_type cc_scaling_db cc_author cc_ft_key cc_ft_desc

DATA BANK REFERENCES - The following are all lists of tuples (swiss-prot accession, swiss-prot name) dr_positive dr_false_neg dr_false_pos dr_potential Potential hits, but fingerprint region not yet available. dr_unknown Could possibly belong

pdb_structs List of PDB entries.

__init__ ( self )