Consumer that converts a Prosite record to a Record object.
Members:
data Record with Prosite data.
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Methods
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__init__
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__init__ ( self )
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_chomp
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_chomp (
self,
word,
to_chomp='.,;',
)
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_clean
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_clean (
self,
line,
rstrip=1,
)
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accession
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accession ( self, line )
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Exceptions
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SyntaxError, "I don't understand accession line\n%s" % line
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comment
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comment ( self, line )
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Exceptions
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SyntaxError, "Unknown qual %s in comment line\n%s" %( repr( qual ), line )
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database_reference
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database_reference ( self, line )
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Exceptions
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SyntaxError, "I don't understand type flag %s" % type
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date
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date ( self, line )
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Exceptions
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SyntaxError, "I don't understand date line\n%s" % line
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description
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description ( self, line )
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documentation
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documentation ( self, line )
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end_record
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end_record ( self )
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identification
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identification ( self, line )
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Exceptions
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SyntaxError, "I don't understand identification line\n%s" % line
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matrix
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matrix ( self, line )
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numerical_results
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numerical_results ( self, line )
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Exceptions
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SyntaxError, "Unknown qual %s in comment line\n%s" %( repr( qual ), line )
error, "Broken data %s in comment line\n%s" %( repr( data ), line )
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pattern
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pattern ( self, line )
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pdb_reference
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pdb_reference ( self, line )
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rule
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rule ( self, line )
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start_record
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start_record ( self )
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terminator
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terminator ( self, line )
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