Module: Rebase

Bio/Rebase/Rebase.py

Rebase.py

This module provides code to work with files from http://rebase.neb.com/rebase/rebase.html

Classes: Record Holds rebase sequence data. Iterator Iterates over sequence data in a rebase file. Dictionary Accesses a rebase file using a dictionary interface. RecordParser Parses rebase sequence data into a Record object.

_Scanner Scans a rebase-format stream. _RecordConsumer Consumes rebase data to a Record object.

Functions: index_file Index a FASTA file for a Dictionary.

Imported modules

from Bio import File, Index
import Bio.File
from Bio.ParserSupport import *
import UserDict
import sgmllib
import string
from types import *
import urllib

Classes

Dictionary	Accesses a rebase file using a dictionary interface.
EnzymeDict
Iterator	Returns one record at a time from a Rebase file.
RebaseParser	Parses Rebase sequence data into a Record object.
Record	Holds information from a Rebase record.

Table of Contents

This document was automatically generated on Mon Jul 1 12:02:54 2002 by HappyDoc version 2.0.1