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Represent a Sequence Feature holding info about a part of a sequence.
This is heavily modeled after the Biocorba SeqFeature objects, and
may be pretty biased towards GenBank stuff since I'm writing it
for the GenBank parser output...
What's here:
Base class to hold a Feature.
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classes:
o SeqFeature
Hold information about a Reference.
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This is an attempt to create a General class to hold Reference type
information.
classes:
o Reference
Specify locations of a feature on a Sequence.
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This aims to handle, in Ewan's words, the dreaded fuzziness issue in
much the same way as Biocorba. This has the advantages of allowing us
to handle fuzzy stuff in case anyone needs it, and also be compatible
with Biocorba.
classes:
o FeatureLocation - Specify the start and end location of a feature.
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Classes
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| AbstractPosition |
Abstract base class representing a position.
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| AfterPosition |
Specify a position where the actual location is found after it.
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| BeforePosition |
Specify a position where the actual location occurs before it.
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| BetweenPosition |
Specify the position of a boundary between two coordinates.
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| ExactPosition |
Specify the specific position of a boundary.
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| FeatureLocation |
Specify the location of a feature along a sequence.
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| OneOfPosition |
Specify a position where the location can be multiple positions.
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| PositionGap |
Simple class to hold information about a gap between positions.
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| Reference |
Represent a Generic Reference object.
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| SeqFeature |
Represent a Sequence Feature on an object.
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| WithinPosition |
Specify the position of a boundary within some coordinates.
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