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Imported modules
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from PropertyManager import default_manager
import Seq
import string
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Functions
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back_transcribe
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back_transcribe ( seq )
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back_translate
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back_translate ( seq, id=None )
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count_monomers
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count_monomers ( seq )
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sum
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sum (
seq,
table,
zero=0.0,
)
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sum_2ple
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sum_2ple (
seq,
table,
zero=( 0.0, 0.0 ),
)
For ranged addition
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total_weight
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total_weight ( seq, weight_table=None )
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total_weight_range
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total_weight_range ( seq, weight_table=None )
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transcribe
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transcribe ( seq )
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translate
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translate ( seq, id=None )
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translate_to_stop
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translate_to_stop ( seq, id=None )
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ungap
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ungap ( seq )
given a sequence with gap encoding, return the ungapped sequence
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verify_alphabet
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verify_alphabet ( seq )
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