Imported modules
|
|
from PropertyManager import default_manager
import Seq
import string
|
Functions
|
|
|
|
back_transcribe
|
back_transcribe ( seq )
|
|
back_translate
|
back_translate ( seq, id=None )
|
|
count_monomers
|
count_monomers ( seq )
|
|
sum
|
sum (
seq,
table,
zero=0.0,
)
|
|
sum_2ple
|
sum_2ple (
seq,
table,
zero=( 0.0, 0.0 ),
)
For ranged addition
|
|
total_weight
|
total_weight ( seq, weight_table=None )
|
|
total_weight_range
|
total_weight_range ( seq, weight_table=None )
|
|
transcribe
|
transcribe ( seq )
|
|
translate
|
translate ( seq, id=None )
|
|
translate_to_stop
|
translate_to_stop ( seq, id=None )
|
|
ungap
|
ungap ( seq )
given a sequence with gap encoding, return the ungapped sequence
|
|
verify_alphabet
|
verify_alphabet ( seq )
|