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Module: BioSeq BioSQL/BioSeq.py

Implementations of Biopython-like Seq objects on top of BioSQL.

This allows retrival of items stored in a BioSQL database using a biopython-like Seq interface.

Imported modules   
import re
Functions   
_get_ontology_terms
load_seq_features
  _get_ontology_terms 
_get_ontology_terms (
        ontology_name,
        bioentry_id,
        adaptor,
        )

Retrieve ontology values associated with the given id and name.

  load_seq_features 
load_seq_features ( adaptor,  primary_id )

Classes   
Annotation
DBInternalSeq

Intermediate database object for retrieving sequence and other info.

DBLink
DBSeq
DBSeqRecord

BioSQL equivalent of the biopython SeqRecord object.

Reference
Species

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