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Revision 1.42 - (view) (annotate) - [select for diffs]
Sun Jul 16 20:33:57 2006 UTC (10 years, 2 months ago) by mauro
Branch: MAIN
CVS Tags: HEAD
Changes since 1.41: +16 -13 lines
Diff to previous 1.41
*** empty log message ***

Revision 1.41 - (view) (annotate) - [select for diffs]
Sat Jun 3 23:18:51 2006 UTC (10 years, 4 months ago) by diegounali
Branch: MAIN
Changes since 1.40: +2 -1 lines
Diff to previous 1.40
*** empty log message ***

Revision 1.40 - (view) (annotate) - [select for diffs]
Thu Jun 1 14:22:20 2006 UTC (10 years, 4 months ago) by diegounali
Branch: MAIN
Changes since 1.39: +3 -1 lines
Diff to previous 1.39
*** empty log message ***

Revision 1.39 - (view) (annotate) - [select for diffs]
Wed May 31 13:20:55 2006 UTC (10 years, 4 months ago) by gdv
Branch: MAIN
Changes since 1.38: +2 -1 lines
Diff to previous 1.38
More files to purge

Revision 1.38 - (view) (annotate) - [select for diffs]
Wed May 31 08:32:04 2006 UTC (10 years, 4 months ago) by diegounali
Branch: MAIN
Changes since 1.37: +2 -2 lines
Diff to previous 1.37
added volcano test for sa algorithm

Revision 1.37 - (view) (annotate) - [select for diffs]
Tue May 30 15:56:17 2006 UTC (10 years, 4 months ago) by diegounali
Branch: MAIN
Changes since 1.36: +1 -0 lines
Diff to previous 1.36
Makefile

Revision 1.36 - (view) (annotate) - [select for diffs]
Sun May 14 22:07:26 2006 UTC (10 years, 4 months ago) by diegounali
Branch: MAIN
Changes since 1.35: +2 -2 lines
Diff to previous 1.35
adding concept check

Revision 1.35 - (view) (annotate) - [select for diffs]
Thu Dec 8 10:02:40 2005 UTC (10 years, 9 months ago) by gdv
Branch: MAIN
Changes since 1.34: +3 -2 lines
Diff to previous 1.34
Reimport from svn

Revision 1.34 - (view) (annotate) - [select for diffs]
Tue Mar 1 02:46:24 2005 UTC (11 years, 7 months ago) by diegounali
Branch: MAIN
Changes since 1.33: +1 -0 lines
Diff to previous 1.33
none

Revision 1.33 - (view) (annotate) - [select for diffs]
Tue Mar 1 02:45:19 2005 UTC (11 years, 7 months ago) by diegounali
Branch: MAIN
Changes since 1.32: +4 -2 lines
Diff to previous 1.32
peturbation update with many typedef and typename declaration

Revision 1.32 - (view) (annotate) - [select for diffs]
Mon Feb 21 03:39:58 2005 UTC (11 years, 7 months ago) by diegounali
Branch: MAIN
Changes since 1.31: +11 -22 lines
Diff to previous 1.31
added new test for sa algorithm

Revision 1.31 - (view) (annotate) - [select for diffs]
Wed Feb 16 13:58:28 2005 UTC (11 years, 7 months ago) by gdv
Branch: MAIN
Changes since 1.30: +21 -10 lines
Diff to previous 1.30
Updated checks for LGPL
Corrected typos in gene_networks/gene_networks.nw

Revision 1.30 - (view) (annotate) - [select for diffs]
Fri Feb 4 01:21:59 2005 UTC (11 years, 7 months ago) by diegounali
Branch: MAIN
Changes since 1.29: +1 -0 lines
Diff to previous 1.29
*** empty log message ***

Revision 1.29 - (view) (annotate) - [select for diffs]
Fri Feb 4 01:20:24 2005 UTC (11 years, 7 months ago) by diegounali
Branch: MAIN
Changes since 1.28: +4 -2 lines
Diff to previous 1.28
update 1

Revision 1.28 - (view) (annotate) - [select for diffs]
Fri Jan 14 02:25:04 2005 UTC (11 years, 8 months ago) by diegounali
Branch: MAIN
Changes since 1.27: +2 -1 lines
Diff to previous 1.27
makefile for generate gene_networks doc

Revision 1.27 - (view) (annotate) - [select for diffs]
Fri Nov 26 09:50:53 2004 UTC (11 years, 10 months ago) by marianilo
Branch: MAIN
Changes since 1.26: +2 -2 lines
Diff to previous 1.26
Added the commands for Haplotype Completion

Revision 1.26 - (view) (annotate) - [select for diffs]
Fri Nov 26 09:47:17 2004 UTC (11 years, 10 months ago) by marianilo
Branch: MAIN
Changes since 1.25: +2 -0 lines
Diff to previous 1.25
Added the lines for haplotype completion.

Revision 1.25 - (view) (annotate) - [select for diffs]
Sun Sep 12 13:39:22 2004 UTC (12 years ago) by gdv
Branch: MAIN
Changes since 1.24: +15 -21 lines
Diff to previous 1.24
Moving website to php

Revision 1.24 - (view) (annotate) - [select for diffs]
Wed Mar 31 12:56:56 2004 UTC (12 years, 6 months ago) by gdv
Branch: MAIN
Changes since 1.23: +1 -1 lines
Diff to previous 1.23
Also run the tests for NJ

Revision 1.23 - (view) (annotate) - [select for diffs]
Wed Mar 31 10:37:23 2004 UTC (12 years, 6 months ago) by gdv
Branch: MAIN
Changes since 1.22: +1 -1 lines
Diff to previous 1.22
Corrected generation of cpp for NJ

Revision 1.22 - (view) (annotate) - [select for diffs]
Tue Mar 23 20:22:43 2004 UTC (12 years, 6 months ago) by gdv
Branch: MAIN
Changes since 1.21: +5 -2 lines
Diff to previous 1.21
create include/alibio

Revision 1.21 - (view) (annotate) - [select for diffs]
Tue Dec 2 10:39:59 2003 UTC (12 years, 10 months ago) by gdv
Branch: MAIN
Changes since 1.20: +8 -5 lines
Diff to previous 1.20
Updated some PHONY targets

Revision 1.20 - (view) (annotate) - [select for diffs]
Tue Nov 18 15:42:18 2003 UTC (12 years, 10 months ago) by gdv
Branch: MAIN
Changes since 1.19: +1 -1 lines
Diff to previous 1.19
Now make clean does not remove .cvsignore

Revision 1.19 - (view) (annotate) - [select for diffs]
Mon Nov 17 08:18:46 2003 UTC (12 years, 10 months ago) by gdv
Branch: MAIN
Changes since 1.18: +32 -53 lines
Diff to previous 1.18
Fixed documentation and makefile

Revision 1.18 - (view) (annotate) - [select for diffs]
Wed Nov 12 20:57:13 2003 UTC (12 years, 10 months ago) by gdv
Branch: MAIN
Changes since 1.17: +4 -2 lines
Diff to previous 1.17
update docs and copyright info.
Added all info regarding nj in the Makefile

Revision 1.17 - (view) (annotate) - [select for diffs]
Wed Oct 29 12:44:20 2003 UTC (12 years, 11 months ago) by gdv
Branch: MAIN
Changes since 1.16: +1 -1 lines
Diff to previous 1.16
Added nj.nw (Neighbor Joining)

Revision 1.16 - (view) (annotate) - [select for diffs]
Sun Oct 12 21:31:30 2003 UTC (12 years, 11 months ago) by gdv
Branch: MAIN
Changes since 1.15: +5 -2 lines
Diff to previous 1.15
Corrected a bug in the script that computes the regression tests.

Improved Makefile, now it retains all intermediate files when testing
the programs

Corrected a test in bio_graph.in, the wrong header made the script fail.

Revision 1.15 - (view) (annotate) - [select for diffs]
Tue Oct 7 11:35:19 2003 UTC (12 years, 11 months ago) by marianilo
Branch: MAIN
Changes since 1.14: +1 -1 lines
Diff to previous 1.14
I've improved the cleaning procedures.

Revision 1.14 - (view) (annotate) - [select for diffs]
Tue Oct 7 09:10:46 2003 UTC (12 years, 11 months ago) by marianilo
Branch: MAIN
Changes since 1.13: +7 -7 lines
Diff to previous 1.13
I've added some missing file types in the cleaning procedures.

Revision 1.13 - (view) (annotate) - [select for diffs]
Fri Sep 26 11:46:40 2003 UTC (13 years ago) by marianilo
Branch: MAIN
Changes since 1.12: +9 -2 lines
Diff to previous 1.12
I've removed the "-a" option used to compile the "cpp" files for the test.

Revision 1.12 - (view) (annotate) - [select for diffs]
Mon Sep 22 09:43:59 2003 UTC (13 years ago) by marianilo
Branch: MAIN
Changes since 1.11: +12 -3 lines
Diff to previous 1.11
Added the commands for the execution of tests for classes: sequence, symbol, alphabet.

Revision 1.11 - (view) (annotate) - [select for diffs]
Tue Aug 12 21:41:37 2003 UTC (13 years, 1 month ago) by gdv
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Better timestamp

Revision 1.10 - (view) (annotate) - [select for diffs]
Sat Aug 9 17:34:25 2003 UTC (13 years, 1 month ago) by gdv
Branch: MAIN
Changes since 1.9: +67 -53 lines
Diff to previous 1.9
All symbols must be upper case

Default gcc/g++ is used as compiler

Revision 1.9 - (view) (annotate) - [select for diffs]
Sun Apr 27 15:30:45 2003 UTC (13 years, 5 months ago) by marianilo
Branch: MAIN
Changes since 1.8: +4 -1 lines
Diff to previous 1.8
added the lines for the extraction of 'bio_graph' class.

Revision 1.8 - (view) (annotate) - [select for diffs]
Thu Mar 27 18:37:51 2003 UTC (13 years, 6 months ago) by gdv
Branch: MAIN
Changes since 1.7: +12 -12 lines
Diff to previous 1.7
Completely changed the framework for the sequences

Revision 1.7 - (view) (annotate) - [select for diffs]
Thu Mar 27 09:29:31 2003 UTC (13 years, 6 months ago) by marianilo
Branch: MAIN
Changes since 1.6: +2 -4 lines
Diff to previous 1.6
again a correction about the new names of the new data structure

Revision 1.6 - (view) (annotate) - [select for diffs]
Thu Mar 27 09:25:04 2003 UTC (13 years, 6 months ago) by marianilo
Branch: MAIN
Changes since 1.5: +6 -18 lines
Diff to previous 1.5
updated the name of the library files, whit the names of the new data structure for sequences

Revision 1.5 - (view) (annotate) - [select for diffs]
Wed Jan 22 13:38:27 2003 UTC (13 years, 8 months ago) by gdv
Branch: MAIN
CVS Tags: release-0-9
Changes since 1.4: +54 -54 lines
Diff to previous 1.4
Added all prerequisites when tangling
added copyright to the prerequisites

Revision 1.4 - (view) (annotate) - [select for diffs]
Mon Jan 13 10:36:12 2003 UTC (13 years, 8 months ago) by gdv
Branch: MAIN
Changes since 1.3: +2 -1 lines
Diff to previous 1.3
Synchronizing HEAD branch

Revision 1.3.6.1 - (view) (annotate) - [select for diffs]
Mon Jan 13 09:57:04 2003 UTC (13 years, 8 months ago) by gdv
Branch: rel-1-1-devel
Changes since 1.3: +2 -1 lines
Diff to previous 1.3 , to next main 1.42
Added copyright.nw to include the copyright in docs

Revision 1.3 - (view) (annotate) - [select for diffs]
Wed Oct 9 21:48:42 2002 UTC (13 years, 11 months ago) by gdv
Branch: MAIN
CVS Tags: HEAD_NEW
Branch point for: rel-1-0-rc, rel-1-0-test, rel-1-1-devel
Changes since 1.2: +1 -1 lines
Diff to previous 1.2
Removed *.tex from files that have to be cleaned

Revision 1.2 - (view) (annotate) - [select for diffs]
Wed Oct 9 21:37:40 2002 UTC (13 years, 11 months ago) by gdv
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
Run script with bash

Revision 1.1.1.1 - (view) (annotate) - [select for diffs] (vendor branch)
Tue Oct 1 13:05:40 2002 UTC (14 years ago) by gdv
Changes since 1.1: +0 -0 lines
Diff to previous 1.1 , to next main 1.42
First import

Revision 1.1 - (view) (annotate) - [select for diffs]
Tue Oct 1 13:05:40 2002 UTC (14 years ago) by gdv
Branch: MAIN
Initial revision

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