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Obtain_Microarray_Data/
Data_Dump.pl 1.8 (12 years ago) by mlinks: A series of updates to make these files use the GENQUIRE environment variables.
Data_Output.pl 1.5 (12 years ago) by mlinks: A series of updates to make these files use the GENQUIRE environment variables.
Data_Tiling_Path.pl 1.7 (12 years ago) by mlinks: A series of updates to make these files use the GENQUIRE environment variables.
HelperMethods.pm 1.3 (12 years ago) by skchan: added comments/perldoc
Make_Tiling_Path.pl 1.6 (12 years ago) by mlinks: A series of updates to make these files use the GENQUIRE environment variables.
Spider.pl 1.3 (15 years ago) by markw: fixed everything necessary to do keyword searches. Also fixed spider.pl so that it matches the new database schema
bulk_parse_contigs.pl 1.9 (12 years ago) by skchan: bulk_parse_contigs.pl has been replaced by Data_Dump/Tiling_Path.pl, so added a die statement at the very beginning of this script. Should consider 'removing' it.
convert_db32_to_db34.sql 1.2 (13 years ago) by markw: making the database friendly to multiple organisms. There was some SQL that had never been tested, and it didn't quite work the way it was supposed to. In addition, the database wasn't quite as intuitive as it could have been, so I removed some undocumented restrictions that didn't need to be there anyway, and then updated the SQL accordingly.
createBlastDB.pm 1.1.1.1 (15 years ago) by markw: Starting Genquire project
create_tilingpath.pl 1.8 (12 years ago) by mlinks: A series of updates to make these files use the GENQUIRE environment variables.
flakes.pm 1.1 (11 years ago) by skchan: I cannot remember why I called the package flakes, but this package will contain accessor and mutator methods for the TIGR XML file just parsed
init_db.pl 1.6 (12 years ago) by mlinks: update to a working version of init_db.pl There should be WORKING versions of code in the CVS!
new_contig.pm 1.1.1.1 (15 years ago) by markw: Starting Genquire project
org.data 1.4 (12 years ago) by mlinks: A series of updates to make these files use the GENQUIRE environment variables.
schema 1.5 (12 years ago) by mlinks: re-added schema to the CVS repository. For some reason it was missing. Without it you cannot cleanly run init_db.pl. Which I am presently fixing too. Oi vei!
schema.dia 1.3 (14 years ago) by markw: added a Quick Import routine to Query Screen to import a huge Fasta file in one go. Looking for a possible bug in Sequence Adaptor that allows a sequence to be in the drop-down list without being assigned an Assembly... thus it can not be opened. Can't find that one... Dave - if you have a minute, have a look at contig AP21 from our GQpub database on Tyan for an example of this bug
schema_v3.2.sql 1.1 (13 years ago) by markw: keeping schema version numbers in file
schema_v3.4.sql 1.6 (12 years ago) by skchan: added tables MICROARRAY_COORDINATES and LOCUS_NAME to hold microarray data
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