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root/biopy-pgml/setup.py
Revision: 1.69
Committed: Wed Apr 21 21:42:48 2004 UTC (12 years, 2 months ago) by chapmanb
Branch: MAIN
CVS Tags: HEAD
Changes since 1.68: +1 -0 lines
Log Message:
*** empty log message ***

Line File contents
1 """Distutils setup file for my python libraries of stuff.
2 """
3 import os
4 import sys
5 import time
6
7 try:
8 from distutils.core import setup
9 except ImportError:
10 print "Installing this package requires distutils, avaiable with"
11 print "python 2.0 or from:"
12 print "http://python.org/sigs/distutils-sig/download.html"
13 sys.exit(0)
14
15 # set the version as the current day
16 time_info = time.localtime(time.time())
17 time_version = "%i%02i%02i" % (time_info[0], time_info[1], time_info[2])
18
19 all_packages = ['Bio',
20 'Bio.PGML',
21 'Bio.PGML.Acedb',
22 'Bio.PGML.Arabidopsis',
23 'Bio.PGML.Arabidopsis.ArabComp',
24 'Bio.PGML.Arabidopsis.ArabDup',
25 'Bio.PGML.Arabidopsis.ArabSNP',
26 'Bio.PGML.Arabidopsis.AtDB',
27 'Bio.PGML.Arabidopsis.GO',
28 'Bio.PGML.Das',
29 'Bio.PGML.Dating',
30 'Bio.PGML.DatingAnalysis',
31 'Bio.PGML.Db',
32 'Bio.PGML.Distributed',
33 'Bio.PGML.Duplicate',
34 'Bio.PGML.Exon',
35 'Bio.PGML.FileAnalysis',
36 'Bio.PGML.GO',
37 'Bio.PGML.Labeling',
38 'Bio.PGML.Mojo',
39 'Bio.PGML.Organism',
40 'Bio.PGML.Organize',
41 'Bio.PGML.Overgo',
42 'Bio.PGML.Rice',
43 'Bio.PGML.Rice.RiceWeb',
44 'Bio.PGML.Rice.RiceFiles',
45 'Bio.PGML.Rice.ArabSynteny',
46 'Bio.PGML.SNP',
47 'Bio.PGML.Stats',
48 'Bio.PGML.Search',
49 'Bio.PGML.Utils']
50
51 setup(name = 'biopy-pgml',
52 version = time_version,
53 author = 'Brad Chapman',
54 author_email = 'chapmanb@arches.uga.edu',
55 url = 'http://www.bioinformatics.org/bradstuff/brad-moinmoin' + \
56 '/moin.cgi/PgmlLibrary',
57 packages=all_packages,
58 scripts = ['Scripts/mojo_blast.py',
59 'Scripts/arabcmp/start_server.py',
60 'Scripts/arabcmp/server_setup.py',
61 'Scripts/arabcmp/client_setup.py',
62 'Scripts/arabcmp/exon_setup.py',
63 'Scripts/arabcmp/exon_oligo_locate.py',
64 'Scripts/arabcmp/add_blast_ests.py',
65 'Scripts/arabcmp/mads_retrieve.py',
66 'Scripts/arabcmp/mads_display.py',
67 'Scripts/arabcmp/family_phylogeny.py',
68 'Scripts/arabcmp/three_way_phylogeny.py',
69 'Scripts/arabcmp/four_way_phylogeny.py',
70 'Scripts/arabcmp/arab_phylogeny_distance.py',
71 'Scripts/arabcmp/process_three_way.py',
72 'Scripts/arabcmp/arab_family_dup.py',
73 'Scripts/arabcmp/arab_region_dup.py',
74 'Scripts/arabcmp/combine_dups.py',
75 'Scripts/arabcmp/check_three_way.py',
76 'Scripts/arabcmp/dup_tree_anova.py',
77 'Scripts/arabcmp/dups_align_distance.py',
78 'Scripts/arabcmp/intronless_genes.py',
79 'Scripts/rice/rice_database.py',
80 'Scripts/rice/split_rice_clones.py',
81 'Scripts/rice/synteny_family_dup.py',
82 'Scripts/rice/synteny_region_dup.py',
83 'Scripts/rice/synteny_combine_dups.py',
84 'Scripts/others/condense_trees.py',
85 'Scripts/others/split_fasta.py',
86 'Scripts/others/split_fasta_records.py',
87 'Scripts/others/synonymous_calc.py',
88 'Scripts/others/parallel_hmmpfam.py',
89 'Scripts/general/get_all_taxonomy.py',
90 'Scripts/general/get_taxonomy_list.py',
91 'Scripts/go/sort_arab_duplications.py',
92 'Scripts/go/arab_family_distances.py',
93 'Scripts/go/find_go_proteins.py',
94 'Scripts/go/go_protein_info.py',
95 'Scripts/go/find_far_go_dups.py',
96 'Scripts/dup/duplicate_fate.py',
97 'Scripts/dup/fate_domains.py',
98 'Scripts/dup/fate_domain_family.py',
99 'Scripts/dup/microarray_dups.py',
100 'Scripts/dup/dup_cis_differences.py',
101 'Scripts/dup/beta_duplicate_fate.py',
102 'Scripts/snp/domain_place_on_dups.py',
103 'Scripts/snp/expression_on_dups.py',
104 'Scripts/snp/gene_conversion.py',
105 'Scripts/snp/update_duplicate_db.py',
106 'Scripts/snp/setup_duplication.py',
107 'Scripts/snp/similarity_on_dups.py',
108 'Scripts/snp/snp_dup_analysis.py',
109 'Scripts/snp/snp_est_place.py',
110 'Scripts/snp/snp_gc_place.py',
111 'Scripts/snp/snp_place_on_dups.py',
112 'Scripts/snp/snp_identity_place.py',
113 'Scripts/snp/snp_distance_place.py',
114 'Scripts/snp/snp_substitution_place.py',
115 'Scripts/dating/phylogeny_dating.py',
116 'Scripts/dating/spreadsheet_output.py',
117 'Scripts/dating/dating_parameters.py',
118 'Scripts/dating/dating_db_size.py',
119 'Scripts/dating/dating_input_file.py',
120 'Scripts/dating/dating_gap_penalty.py',
121 'Scripts/dating/dating_sub_matrix.py',
122 'Scripts/dating/dating_subs_values.py',
123 'Scripts/dating/dating_util_sizes.py',
124 'Scripts/dating/dating_util_matrix.py',
125 'Scripts/dating/dating_util_dup.py'])