Tagging 1.9.4 released in the web site as 1.1.1. This is an important bug fix on 1.1 of the dali alignment function which was badly broken.

Tagging version 1.9.3 released as 1.1rc6. Bug fix: loupe works even with very small contacts.

tagging version 1.9.2 released as 1.1rc5; new feature: more tolerant to errors in PDB files, can read most original PDB files

tagging release version 1.1rc4; new features: loupe and real-time mode

tagging version 1.9.0 released as 1.1rc3

tagging CMView version 1.2.0 before major refactoring of aglappe/owl; lots of changes since last version including: Tinker reconstruction, structural alignment with DALI, lower left contact map display, new side bar with overlay menus and coordinate display, delta rank related functions

Tagging version 1.1.2 to match aglappe 1.1.2, before major refactoring.

tagging to match aglappe 1.1.1, changes: new command line option -I to write image file, weighted contacts can be shown in color, few bug fixes

Tagging ver 1.1.0. Now using jung beta1 jars.

Tagging ver 0.9.6. Now using jung beta1 jars.

Tagging version 0.9.5 (initial version of CMView-1.0.x-release branch)

Tagging ver. 0.9.4: new communication mechanism with PyMol: using stdin and buffer files. Dropped xml-rpc totally. Many bug fixes. New command line options.

Tagging version 0.9.3. Full java help, reorganised config variables, added license and windows/linux executables, updated versions of xml-rpc libraries to 3.1 and ws-commons to 1.02., fixed all pymol communication issues, also much faster thanks to command buffer file. Many bug fixes.

Deleting 1.0-rc1 tag. That was too premature for a RC

(Re-)Tagging release candidate 1 for version 1.0. Full java help, reorganised config variables, added license, windows/linux executables and README, many bug fixes

Deleting tag. Severe bugs found

Tagging release candidate 1 for version 1.0. Full java help, reorganised config variables, added license, windows/linux executables and README, many bug fixes

(2nd Re-)Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, fixed reading of PDB/CASP TS files, selection modes now in select menu, loads of bug fixes

Deleting tag. Found an important bug in Mac

(Re-)Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, fixed reading of PDB/CASP TS files, selection modes now in select menu, loads of bug fixes

Removing tag: found a really bad bug

Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, selection modes now in select menu, loads of bug fixes

(3rd re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane

Deleting tag. Struppi manifest still not working

(Re-re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane

Deleting tag again. Missing jars in manifest

(Re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane

Removing tag 0.9.1, important bug in it

Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane

Tagging version 0.9 (same as CMView-jung 0.1.2 but moved to trunk)

Tagging version 0.8.7 from trunk: last pre-JUNG version before merging JUNG branch to the trunk

zkug

uses aglappe-jung-0.1.2

still not working!!!

uses aglappe-jung-0.1.2

still not working!!!

uses aglappe-0.1.2

still not working

uses aglappe-0.1.2 (already the third try (!), s. history)

still incomplete!

uses aglappe-jung-0.1.2 (this tag already includes the current version information)

forgot to adapt version information

uses aglappe-jung-0.1.2

requires aglappe-jung-0.1.1

use aglappe in version aglappe-jung-0.1

(Re-)Tagging ver. 0.8.6 at rev 246. This will be the last tag for pre-JUNG

Deleting tag, forgot changing versions in code and manifests!!

Tagging ver. 0.8.6 at rev 238. This will be the last tag for pre-JUNG

tagging version 0.8.5; skipping 0.8.4 because of groundbreaking changes, including: pairwise comparison, icon bar, new selection options by secondary structure, color and residue number, loading from online pdb

Tagging version 0.8.3 : read casp prediction files, can use dssp for secondary structure assignment, save to graph db

tagging version 0.8.2 : show secondary structure in rulers, node selections, faster graph calculation

tagging version 0.8.1 (even better error messages, configuration file, should run on win/mac, shutdown pymol on exit)

tagging version 0.8: better error messages, icons for color and view menu items, show non-edge in pymol, using pymol 1.0 and xmlrpc 3.0

tagging version 0.7 (show distance map, show contact density, diagonal selection, deleting edges)

Tagging version 0.6. New features:
show common neighbours by size, 
select node neighbours, 
color contacts, 
better com. neighbours display, 
can specify pdb code and chain from command line, 
showing of original pdb residue numbers

Tagging version 0.5
fixed all residue/screen coordinates issues,
multiple selection with CTRL+click possible, 
displays residue types as well as coordinates

That was an error

tagged version 0.4

Rename copy of trunk in tags to CM2Pymol-0.3

Deleting empty directory for version 0.3

Copying trunk to tags

Delete wrong location for tagged version 0.3 again

Second try to tag version 0.3

Removed wrong location for tagged version 0.3

Tagged version 0.3

Created directory for 0.3 tag

tagged version 0.2 (exported as jar file)

renamed tag from version0.1_byJuliane to CM2PyMol-0.1_byJuliane

tagged original version created by Juliane Dinse in Feb/Mar 2007

Initial import of the CM2PyMol project