Revision
813 -
Directory Listing
Modified
Thu Aug 18 06:59:39 2011 UTC
(6 years, 8 months ago)
by
jmduarteg
Tagging 1.9.4 released in the web site as 1.1.1. This is an important bug fix on 1.1 of the dali alignment function which was badly broken.
Revision
794 -
Directory Listing
Modified
Wed Mar 30 20:00:35 2011 UTC
(7 years ago)
by
jmduarteg
Tagging version 1.9.3 released as 1.1rc6. Bug fix: loupe works even with very small contacts.
Revision
788 -
Directory Listing
Modified
Tue Mar 22 18:22:23 2011 UTC
(7 years, 1 month ago)
by
jmduarteg
tagging version 1.9.2 released as 1.1rc5; new feature: more tolerant to errors in PDB files, can read most original PDB files
Revision
784 -
Directory Listing
Modified
Sat Feb 26 11:15:56 2011 UTC
(7 years, 1 month ago)
by
hstehr
tagging release version 1.1rc4; new features: loupe and real-time mode
Revision
752 -
Directory Listing
Modified
Fri Jan 14 20:18:06 2011 UTC
(7 years, 3 months ago)
by
hstehr
tagging version 1.9.0 released as 1.1rc3
Revision
576 -
Directory Listing
Modified
Wed Mar 31 11:51:30 2010 UTC
(8 years ago)
by
stehr
tagging CMView version 1.2.0 before major refactoring of aglappe/owl; lots of changes since last version including: Tinker reconstruction, structural alignment with DALI, lower left contact map display, new side bar with overlay menus and coordinate display, delta rank related functions
Revision
561 -
Directory Listing
Modified
Thu Jan 28 16:13:36 2010 UTC
(8 years, 2 months ago)
by
duarte
Tagging version 1.1.2 to match aglappe 1.1.2, before major refactoring.
Revision
531 -
Directory Listing
Modified
Tue Aug 11 13:06:11 2009 UTC
(8 years, 8 months ago)
by
stehr
tagging to match aglappe 1.1.1, changes: new command line option -I to write image file, weighted contacts can be shown in color, few bug fixes
Revision
517 -
Directory Listing
Modified
Wed Aug 27 13:35:44 2008 UTC
(9 years, 7 months ago)
by
duarte
Tagging ver 1.1.0. Now using jung beta1 jars.
Revision
516 -
Directory Listing
Modified
Wed Aug 27 13:33:38 2008 UTC
(9 years, 7 months ago)
by
duarte
Tagging ver 0.9.6. Now using jung beta1 jars.
Revision
487 -
Directory Listing
Modified
Mon Jun 23 10:18:23 2008 UTC
(9 years, 10 months ago)
by
stehr
Tagging version 0.9.5 (initial version of CMView-1.0.x-release branch)
Revision
483 -
Directory Listing
Modified
Tue May 27 12:36:39 2008 UTC
(9 years, 10 months ago)
by
duarte
Tagging ver. 0.9.4: new communication mechanism with PyMol: using stdin and buffer files. Dropped xml-rpc totally. Many bug fixes. New command line options.
Revision
459 -
Directory Listing
Modified
Thu Feb 28 14:34:28 2008 UTC
(10 years, 1 month ago)
by
duarte
Tagging version 0.9.3. Full java help, reorganised config variables, added license and windows/linux executables, updated versions of xml-rpc libraries to 3.1 and ws-commons to 1.02., fixed all pymol communication issues, also much faster thanks to command buffer file. Many bug fixes.
Revision
457 -
Directory Listing
Modified
Thu Feb 28 14:23:59 2008 UTC
(10 years, 1 month ago)
by
duarte
Deleting 1.0-rc1 tag. That was too premature for a RC
Revision
424 -
Directory Listing
Modified
Tue Feb 19 19:01:08 2008 UTC
(10 years, 2 months ago)
by
duarte
(Re-)Tagging release candidate 1 for version 1.0. Full java help, reorganised config variables, added license, windows/linux executables and README, many bug fixes
Revision
423 -
Directory Listing
Modified
Tue Feb 19 18:59:59 2008 UTC
(10 years, 2 months ago)
by
duarte
Deleting tag. Severe bugs found
Revision
421 -
Directory Listing
Modified
Tue Feb 19 16:25:31 2008 UTC
(10 years, 2 months ago)
by
duarte
Tagging release candidate 1 for version 1.0. Full java help, reorganised config variables, added license, windows/linux executables and README, many bug fixes
Revision
364 -
Directory Listing
Modified
Thu Jan 31 12:02:49 2008 UTC
(10 years, 2 months ago)
by
duarte
(2nd Re-)Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, fixed reading of PDB/CASP TS files, selection modes now in select menu, loads of bug fixes
Revision
363 -
Directory Listing
Modified
Thu Jan 31 12:02:09 2008 UTC
(10 years, 2 months ago)
by
duarte
Deleting tag. Found an important bug in Mac
Revision
361 -
Directory Listing
Modified
Thu Jan 31 09:34:22 2008 UTC
(10 years, 2 months ago)
by
duarte
(Re-)Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, fixed reading of PDB/CASP TS files, selection modes now in select menu, loads of bug fixes
Revision
360 -
Directory Listing
Modified
Thu Jan 31 09:33:10 2008 UTC
(10 years, 2 months ago)
by
duarte
Removing tag: found a really bad bug
Revision
358 -
Directory Listing
Modified
Thu Jan 31 09:21:14 2008 UTC
(10 years, 2 months ago)
by
duarte
Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, selection modes now in select menu, loads of bug fixes
Revision
326 -
Directory Listing
Modified
Thu Jan 10 17:25:53 2008 UTC
(10 years, 3 months ago)
by
duarte
(3rd re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision
325 -
Directory Listing
Modified
Thu Jan 10 17:25:03 2008 UTC
(10 years, 3 months ago)
by
duarte
Deleting tag. Struppi manifest still not working
Revision
323 -
Directory Listing
Modified
Thu Jan 10 17:15:55 2008 UTC
(10 years, 3 months ago)
by
duarte
(Re-re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision
322 -
Directory Listing
Modified
Thu Jan 10 17:15:02 2008 UTC
(10 years, 3 months ago)
by
duarte
Deleting tag again. Missing jars in manifest
Revision
320 -
Directory Listing
Modified
Thu Jan 10 17:03:39 2008 UTC
(10 years, 3 months ago)
by
duarte
(Re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision
319 -
Directory Listing
Modified
Thu Jan 10 17:02:53 2008 UTC
(10 years, 3 months ago)
by
duarte
Removing tag 0.9.1, important bug in it
Revision
317 -
Directory Listing
Modified
Thu Jan 10 16:29:12 2008 UTC
(10 years, 3 months ago)
by
stehr
Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision
294 -
Directory Listing
Modified
Wed Jan 2 14:01:36 2008 UTC
(10 years, 3 months ago)
by
stehr
Tagging version 0.9 (same as CMView-jung 0.1.2 but moved to trunk)
Revision
290 -
Directory Listing
Modified
Wed Jan 2 11:14:56 2008 UTC
(10 years, 3 months ago)
by
duarte
Tagging version 0.8.7 from trunk: last pre-JUNG version before merging JUNG branch to the trunk
Revision
288 -
Directory Listing
Modified
Thu Dec 20 14:34:00 2007 UTC
(10 years, 4 months ago)
by
lpetzo
Revision
287 -
Directory Listing
Modified
Thu Dec 20 14:33:32 2007 UTC
(10 years, 4 months ago)
by
lpetzo
zkug
Revision
286 -
Directory Listing
Modified
Thu Dec 20 13:41:41 2007 UTC
(10 years, 4 months ago)
by
lpetzo
uses aglappe-jung-0.1.2
Revision
285 -
Directory Listing
Modified
Thu Dec 20 13:41:04 2007 UTC
(10 years, 4 months ago)
by
lpetzo
still not working!!!
Revision
283 -
Directory Listing
Modified
Thu Dec 20 13:37:52 2007 UTC
(10 years, 4 months ago)
by
lpetzo
uses aglappe-jung-0.1.2
Revision
282 -
Directory Listing
Modified
Thu Dec 20 13:37:21 2007 UTC
(10 years, 4 months ago)
by
lpetzo
still not working!!!
Revision
280 -
Directory Listing
Modified
Thu Dec 20 13:29:29 2007 UTC
(10 years, 4 months ago)
by
lpetzo
uses aglappe-0.1.2
Revision
279 -
Directory Listing
Modified
Thu Dec 20 13:28:43 2007 UTC
(10 years, 4 months ago)
by
lpetzo
still not working
Revision
277 -
Directory Listing
Modified
Thu Dec 20 13:22:51 2007 UTC
(10 years, 4 months ago)
by
lpetzo
Revision
276 -
Directory Listing
Modified
Thu Dec 20 13:15:04 2007 UTC
(10 years, 4 months ago)
by
lpetzo
Revision
275 -
Directory Listing
Modified
Thu Dec 20 13:12:52 2007 UTC
(10 years, 4 months ago)
by
lpetzo
Revision
274 -
Directory Listing
Modified
Thu Dec 20 12:04:12 2007 UTC
(10 years, 4 months ago)
by
lpetzo
uses aglappe-0.1.2 (already the third try (!), s. history)
Revision
273 -
Directory Listing
Modified
Thu Dec 20 12:01:30 2007 UTC
(10 years, 4 months ago)
by
lpetzo
still incomplete!
Revision
271 -
Directory Listing
Modified
Thu Dec 20 11:24:25 2007 UTC
(10 years, 4 months ago)
by
lpetzo
uses aglappe-jung-0.1.2 (this tag already includes the current version information)
Revision
270 -
Directory Listing
Modified
Thu Dec 20 11:22:49 2007 UTC
(10 years, 4 months ago)
by
lpetzo
forgot to adapt version information
Revision
268 -
Directory Listing
Modified
Thu Dec 20 11:15:14 2007 UTC
(10 years, 4 months ago)
by
lpetzo
uses aglappe-jung-0.1.2
Revision
262 -
Directory Listing
Modified
Sat Dec 15 10:00:38 2007 UTC
(10 years, 4 months ago)
by
lpetzo
requires aglappe-jung-0.1.1
Revision
260 -
Directory Listing
Modified
Thu Dec 13 10:25:22 2007 UTC
(10 years, 4 months ago)
by
lpetzo
use aglappe in version aglappe-jung-0.1
Revision
247 -
Directory Listing
Modified
Wed Nov 28 16:40:46 2007 UTC
(10 years, 4 months ago)
by
duarte
(Re-)Tagging ver. 0.8.6 at rev 246. This will be the last tag for pre-JUNG
Revision
244 -
Directory Listing
Modified
Wed Nov 28 16:31:37 2007 UTC
(10 years, 4 months ago)
by
duarte
Deleting tag, forgot changing versions in code and manifests!!
Revision
243 -
Directory Listing
Modified
Wed Nov 28 16:30:42 2007 UTC
(10 years, 4 months ago)
by
duarte
Tagging ver. 0.8.6 at rev 238. This will be the last tag for pre-JUNG
Revision
208 -
Directory Listing
Modified
Mon Oct 22 08:46:25 2007 UTC
(10 years, 6 months ago)
by
stehr
tagging version 0.8.5; skipping 0.8.4 because of groundbreaking changes, including: pairwise comparison, icon bar, new selection options by secondary structure, color and residue number, loading from online pdb
Revision
170 -
Directory Listing
Modified
Mon Aug 27 14:41:09 2007 UTC
(10 years, 7 months ago)
by
stehr
Tagging version 0.8.3 : read casp prediction files, can use dssp for secondary structure assignment, save to graph db
Revision
164 -
Directory Listing
Modified
Mon Aug 6 15:51:55 2007 UTC
(10 years, 8 months ago)
by
stehr
tagging version 0.8.2 : show secondary structure in rulers, node selections, faster graph calculation
Revision
147 -
Directory Listing
Modified
Wed Jul 4 09:38:49 2007 UTC
(10 years, 9 months ago)
by
stehr
tagging version 0.8.1 (even better error messages, configuration file, should run on win/mac, shutdown pymol on exit)
Revision
126 -
Directory Listing
Modified
Tue Jun 26 17:06:03 2007 UTC
(10 years, 9 months ago)
by
stehr
tagging version 0.8: better error messages, icons for color and view menu items, show non-edge in pymol, using pymol 1.0 and xmlrpc 3.0
Revision
105 -
Directory Listing
Modified
Tue Jun 19 12:27:42 2007 UTC
(10 years, 10 months ago)
by
stehr
Revision
102 -
Directory Listing
Modified
Tue Jun 19 09:24:36 2007 UTC
(10 years, 10 months ago)
by
stehr
tagging version 0.7 (show distance map, show contact density, diagonal selection, deleting edges)
Revision
85 -
Directory Listing
Modified
Thu Jun 14 14:46:18 2007 UTC
(10 years, 10 months ago)
by
duarte
Tagging version 0.6. New features:
show common neighbours by size,
select node neighbours,
color contacts,
better com. neighbours display,
can specify pdb code and chain from command line,
showing of original pdb residue numbers
Revision
64 -
Directory Listing
Modified
Mon Jun 11 14:07:58 2007 UTC
(10 years, 10 months ago)
by
duarte
Tagging version 0.5
fixed all residue/screen coordinates issues,
multiple selection with CTRL+click possible,
displays residue types as well as coordinates
Revision
63 -
Directory Listing
Modified
Mon Jun 11 14:06:40 2007 UTC
(10 years, 10 months ago)
by
duarte
That was an error
Revision
62 -
Directory Listing
Modified
Mon Jun 11 14:06:15 2007 UTC
(10 years, 10 months ago)
by
duarte
Revision
49 -
Directory Listing
Modified
Thu May 24 13:47:09 2007 UTC
(10 years, 11 months ago)
by
stehr
tagged version 0.4
Revision
42 -
Directory Listing
Modified
Thu May 10 14:52:16 2007 UTC
(10 years, 11 months ago)
by
stehr
Rename copy of trunk in tags to CM2Pymol-0.3
Revision
41 -
Directory Listing
Modified
Thu May 10 14:51:30 2007 UTC
(10 years, 11 months ago)
by
stehr
Deleting empty directory for version 0.3
Revision
40 -
Directory Listing
Modified
Thu May 10 14:50:55 2007 UTC
(10 years, 11 months ago)
by
stehr
Copying trunk to tags
Revision
39 -
Directory Listing
Modified
Thu May 10 14:48:23 2007 UTC
(10 years, 11 months ago)
by
stehr
Delete wrong location for tagged version 0.3 again
Revision
38 -
Directory Listing
Modified
Thu May 10 14:47:11 2007 UTC
(10 years, 11 months ago)
by
stehr
Second try to tag version 0.3
Revision
37 -
Directory Listing
Modified
Thu May 10 14:44:56 2007 UTC
(10 years, 11 months ago)
by
stehr
Removed wrong location for tagged version 0.3
Revision
36 -
Directory Listing
Modified
Thu May 10 14:44:01 2007 UTC
(10 years, 11 months ago)
by
stehr
Tagged version 0.3
Revision
35 -
Directory Listing
Modified
Thu May 10 14:43:17 2007 UTC
(10 years, 11 months ago)
by
stehr
Created directory for 0.3 tag
Revision
29 -
Directory Listing
Modified
Thu May 3 11:05:10 2007 UTC
(10 years, 11 months ago)
by
stehr
tagged version 0.2 (exported as jar file)
Revision
28 -
Directory Listing
Modified
Thu May 3 10:19:52 2007 UTC
(10 years, 11 months ago)
by
stehr
renamed tag from version0.1_byJuliane to CM2PyMol-0.1_byJuliane
Revision
22 -
Directory Listing
Modified
Wed Apr 11 08:30:18 2007 UTC
(11 years ago)
by
stehr
tagged original version created by Juliane Dinse in Feb/Mar 2007
Revision
1 -
Directory Listing
Added
Wed Mar 14 09:18:10 2007 UTC
(11 years, 1 month ago)
by
dinse
Initial import of the CM2PyMol project