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Revision 813 - Directory Listing
Modified Thu Aug 18 06:59:39 2011 UTC (4 years, 8 months ago) by jmduarteg
Tagging 1.9.4 released in the web site as 1.1.1. This is an important bug fix on 1.1 of the dali alignment function which was badly broken.
Revision 794 - Directory Listing
Modified Wed Mar 30 20:00:35 2011 UTC (5 years, 1 month ago) by jmduarteg
Tagging version 1.9.3 released as 1.1rc6. Bug fix: loupe works even with very small contacts.
Revision 788 - Directory Listing
Modified Tue Mar 22 18:22:23 2011 UTC (5 years, 1 month ago) by jmduarteg
tagging version 1.9.2 released as 1.1rc5; new feature: more tolerant to errors in PDB files, can read most original PDB files
Revision 784 - Directory Listing
Modified Sat Feb 26 11:15:56 2011 UTC (5 years, 2 months ago) by hstehr
tagging release version 1.1rc4; new features: loupe and real-time mode
Revision 752 - Directory Listing
Modified Fri Jan 14 20:18:06 2011 UTC (5 years, 3 months ago) by hstehr
tagging version 1.9.0 released as 1.1rc3
Revision 576 - Directory Listing
Modified Wed Mar 31 11:51:30 2010 UTC (6 years, 1 month ago) by stehr
tagging CMView version 1.2.0 before major refactoring of aglappe/owl; lots of changes since last version including: Tinker reconstruction, structural alignment with DALI, lower left contact map display, new side bar with overlay menus and coordinate display, delta rank related functions
Revision 561 - Directory Listing
Modified Thu Jan 28 16:13:36 2010 UTC (6 years, 3 months ago) by duarte
Tagging version 1.1.2 to match aglappe 1.1.2, before major refactoring.
Revision 531 - Directory Listing
Modified Tue Aug 11 13:06:11 2009 UTC (6 years, 8 months ago) by stehr
tagging to match aglappe 1.1.1, changes: new command line option -I to write image file, weighted contacts can be shown in color, few bug fixes
Revision 517 - Directory Listing
Modified Wed Aug 27 13:35:44 2008 UTC (7 years, 8 months ago) by duarte
Tagging ver 1.1.0. Now using jung beta1 jars.
Revision 516 - Directory Listing
Modified Wed Aug 27 13:33:38 2008 UTC (7 years, 8 months ago) by duarte
Tagging ver 0.9.6. Now using jung beta1 jars.
Revision 487 - Directory Listing
Modified Mon Jun 23 10:18:23 2008 UTC (7 years, 10 months ago) by stehr
Tagging version 0.9.5 (initial version of CMView-1.0.x-release branch)
Revision 483 - Directory Listing
Modified Tue May 27 12:36:39 2008 UTC (7 years, 11 months ago) by duarte
Tagging ver. 0.9.4: new communication mechanism with PyMol: using stdin and buffer files. Dropped xml-rpc totally. Many bug fixes. New command line options.
Revision 459 - Directory Listing
Modified Thu Feb 28 14:34:28 2008 UTC (8 years, 2 months ago) by duarte
Tagging version 0.9.3. Full java help, reorganised config variables, added license and windows/linux executables, updated versions of xml-rpc libraries to 3.1 and ws-commons to 1.02., fixed all pymol communication issues, also much faster thanks to command buffer file. Many bug fixes.
Revision 457 - Directory Listing
Modified Thu Feb 28 14:23:59 2008 UTC (8 years, 2 months ago) by duarte
Deleting 1.0-rc1 tag. That was too premature for a RC
Revision 424 - Directory Listing
Modified Tue Feb 19 19:01:08 2008 UTC (8 years, 2 months ago) by duarte
(Re-)Tagging release candidate 1 for version 1.0. Full java help, reorganised config variables, added license, windows/linux executables and README, many bug fixes
Revision 423 - Directory Listing
Modified Tue Feb 19 18:59:59 2008 UTC (8 years, 2 months ago) by duarte
Deleting tag. Severe bugs found
Revision 421 - Directory Listing
Modified Tue Feb 19 16:25:31 2008 UTC (8 years, 2 months ago) by duarte
Tagging release candidate 1 for version 1.0. Full java help, reorganised config variables, added license, windows/linux executables and README, many bug fixes
Revision 364 - Directory Listing
Modified Thu Jan 31 12:02:49 2008 UTC (8 years, 3 months ago) by duarte
(2nd Re-)Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, fixed reading of PDB/CASP TS files, selection modes now in select menu, loads of bug fixes
Revision 363 - Directory Listing
Modified Thu Jan 31 12:02:09 2008 UTC (8 years, 3 months ago) by duarte
Deleting tag. Found an important bug in Mac
Revision 361 - Directory Listing
Modified Thu Jan 31 09:34:22 2008 UTC (8 years, 3 months ago) by duarte
(Re-)Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, fixed reading of PDB/CASP TS files, selection modes now in select menu, loads of bug fixes
Revision 360 - Directory Listing
Modified Thu Jan 31 09:33:10 2008 UTC (8 years, 3 months ago) by duarte
Removing tag: found a really bad bug
Revision 358 - Directory Listing
Modified Thu Jan 31 09:21:14 2008 UTC (8 years, 3 months ago) by duarte
Tagging ver 0.9.2. Redesigned handling of alignment and models: always using alignment even in single mode, selection modes now in select menu, loads of bug fixes
Revision 326 - Directory Listing
Modified Thu Jan 10 17:25:53 2008 UTC (8 years, 3 months ago) by duarte
(3rd re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision 325 - Directory Listing
Modified Thu Jan 10 17:25:03 2008 UTC (8 years, 3 months ago) by duarte
Deleting tag. Struppi manifest still not working
Revision 323 - Directory Listing
Modified Thu Jan 10 17:15:55 2008 UTC (8 years, 3 months ago) by duarte
(Re-re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision 322 - Directory Listing
Modified Thu Jan 10 17:15:02 2008 UTC (8 years, 3 months ago) by duarte
Deleting tag again. Missing jars in manifest
Revision 320 - Directory Listing
Modified Thu Jan 10 17:03:39 2008 UTC (8 years, 3 months ago) by duarte
(Re-)Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision 319 - Directory Listing
Modified Thu Jan 10 17:02:53 2008 UTC (8 years, 3 months ago) by duarte
Removing tag 0.9.1, important bug in it
Revision 317 - Directory Listing
Modified Thu Jan 10 16:29:12 2008 UTC (8 years, 3 months ago) by stehr
Tagging version 0.9.1: loading/saving Casp RR files, new info dialog with sequence view, bugfixes, redesigned selections in cmPane
Revision 294 - Directory Listing
Modified Wed Jan 2 14:01:36 2008 UTC (8 years, 4 months ago) by stehr
Tagging version 0.9 (same as CMView-jung 0.1.2 but moved to trunk)
Revision 290 - Directory Listing
Modified Wed Jan 2 11:14:56 2008 UTC (8 years, 4 months ago) by duarte
Tagging version 0.8.7 from trunk: last pre-JUNG version before merging JUNG branch to the trunk
Revision 288 - Directory Listing
Modified Thu Dec 20 14:34:00 2007 UTC (8 years, 4 months ago) by lpetzo

Revision 287 - Directory Listing
Modified Thu Dec 20 14:33:32 2007 UTC (8 years, 4 months ago) by lpetzo
zkug
Revision 286 - Directory Listing
Modified Thu Dec 20 13:41:41 2007 UTC (8 years, 4 months ago) by lpetzo
uses aglappe-jung-0.1.2

Revision 285 - Directory Listing
Modified Thu Dec 20 13:41:04 2007 UTC (8 years, 4 months ago) by lpetzo
still not working!!!
Revision 283 - Directory Listing
Modified Thu Dec 20 13:37:52 2007 UTC (8 years, 4 months ago) by lpetzo
uses aglappe-jung-0.1.2
Revision 282 - Directory Listing
Modified Thu Dec 20 13:37:21 2007 UTC (8 years, 4 months ago) by lpetzo
still not working!!!
Revision 280 - Directory Listing
Modified Thu Dec 20 13:29:29 2007 UTC (8 years, 4 months ago) by lpetzo
uses aglappe-0.1.2
Revision 279 - Directory Listing
Modified Thu Dec 20 13:28:43 2007 UTC (8 years, 4 months ago) by lpetzo
still not working
Revision 277 - Directory Listing
Modified Thu Dec 20 13:22:51 2007 UTC (8 years, 4 months ago) by lpetzo

Revision 276 - Directory Listing
Modified Thu Dec 20 13:15:04 2007 UTC (8 years, 4 months ago) by lpetzo

Revision 275 - Directory Listing
Modified Thu Dec 20 13:12:52 2007 UTC (8 years, 4 months ago) by lpetzo

Revision 274 - Directory Listing
Modified Thu Dec 20 12:04:12 2007 UTC (8 years, 4 months ago) by lpetzo
uses aglappe-0.1.2 (already the third try (!), s. history)
Revision 273 - Directory Listing
Modified Thu Dec 20 12:01:30 2007 UTC (8 years, 4 months ago) by lpetzo
still incomplete!
Revision 271 - Directory Listing
Modified Thu Dec 20 11:24:25 2007 UTC (8 years, 4 months ago) by lpetzo
uses aglappe-jung-0.1.2 (this tag already includes the current version information)
Revision 270 - Directory Listing
Modified Thu Dec 20 11:22:49 2007 UTC (8 years, 4 months ago) by lpetzo
forgot to adapt version information
Revision 268 - Directory Listing
Modified Thu Dec 20 11:15:14 2007 UTC (8 years, 4 months ago) by lpetzo
uses aglappe-jung-0.1.2
Revision 262 - Directory Listing
Modified Sat Dec 15 10:00:38 2007 UTC (8 years, 4 months ago) by lpetzo
requires aglappe-jung-0.1.1
Revision 260 - Directory Listing
Modified Thu Dec 13 10:25:22 2007 UTC (8 years, 4 months ago) by lpetzo
use aglappe in version aglappe-jung-0.1
Revision 247 - Directory Listing
Modified Wed Nov 28 16:40:46 2007 UTC (8 years, 5 months ago) by duarte
(Re-)Tagging ver. 0.8.6 at rev 246. This will be the last tag for pre-JUNG
Revision 244 - Directory Listing
Modified Wed Nov 28 16:31:37 2007 UTC (8 years, 5 months ago) by duarte
Deleting tag, forgot changing versions in code and manifests!!
Revision 243 - Directory Listing
Modified Wed Nov 28 16:30:42 2007 UTC (8 years, 5 months ago) by duarte
Tagging ver. 0.8.6 at rev 238. This will be the last tag for pre-JUNG
Revision 208 - Directory Listing
Modified Mon Oct 22 08:46:25 2007 UTC (8 years, 6 months ago) by stehr
tagging version 0.8.5; skipping 0.8.4 because of groundbreaking changes, including: pairwise comparison, icon bar, new selection options by secondary structure, color and residue number, loading from online pdb
Revision 170 - Directory Listing
Modified Mon Aug 27 14:41:09 2007 UTC (8 years, 8 months ago) by stehr
Tagging version 0.8.3 : read casp prediction files, can use dssp for secondary structure assignment, save to graph db
Revision 164 - Directory Listing
Modified Mon Aug 6 15:51:55 2007 UTC (8 years, 8 months ago) by stehr
tagging version 0.8.2 : show secondary structure in rulers, node selections, faster graph calculation
Revision 147 - Directory Listing
Modified Wed Jul 4 09:38:49 2007 UTC (8 years, 10 months ago) by stehr
tagging version 0.8.1 (even better error messages, configuration file, should run on win/mac, shutdown pymol on exit)
Revision 126 - Directory Listing
Modified Tue Jun 26 17:06:03 2007 UTC (8 years, 10 months ago) by stehr
tagging version 0.8: better error messages, icons for color and view menu items, show non-edge in pymol, using pymol 1.0 and xmlrpc 3.0
Revision 105 - Directory Listing
Modified Tue Jun 19 12:27:42 2007 UTC (8 years, 10 months ago) by stehr

Revision 102 - Directory Listing
Modified Tue Jun 19 09:24:36 2007 UTC (8 years, 10 months ago) by stehr
tagging version 0.7 (show distance map, show contact density, diagonal selection, deleting edges)
Revision 85 - Directory Listing
Modified Thu Jun 14 14:46:18 2007 UTC (8 years, 10 months ago) by duarte
Tagging version 0.6. New features:
show common neighbours by size, 
select node neighbours, 
color contacts, 
better com. neighbours display, 
can specify pdb code and chain from command line, 
showing of original pdb residue numbers
Revision 64 - Directory Listing
Modified Mon Jun 11 14:07:58 2007 UTC (8 years, 10 months ago) by duarte
Tagging version 0.5
fixed all residue/screen coordinates issues,
multiple selection with CTRL+click possible, 
displays residue types as well as coordinates
Revision 63 - Directory Listing
Modified Mon Jun 11 14:06:40 2007 UTC (8 years, 10 months ago) by duarte
That was an error
Revision 62 - Directory Listing
Modified Mon Jun 11 14:06:15 2007 UTC (8 years, 10 months ago) by duarte

Revision 49 - Directory Listing
Modified Thu May 24 13:47:09 2007 UTC (8 years, 11 months ago) by stehr
tagged version 0.4
Revision 42 - Directory Listing
Modified Thu May 10 14:52:16 2007 UTC (8 years, 11 months ago) by stehr
Rename copy of trunk in tags to CM2Pymol-0.3
Revision 41 - Directory Listing
Modified Thu May 10 14:51:30 2007 UTC (8 years, 11 months ago) by stehr
Deleting empty directory for version 0.3
Revision 40 - Directory Listing
Modified Thu May 10 14:50:55 2007 UTC (8 years, 11 months ago) by stehr
Copying trunk to tags
Revision 39 - Directory Listing
Modified Thu May 10 14:48:23 2007 UTC (8 years, 11 months ago) by stehr
Delete wrong location for tagged version 0.3 again
Revision 38 - Directory Listing
Modified Thu May 10 14:47:11 2007 UTC (8 years, 11 months ago) by stehr
Second try to tag version 0.3

Revision 37 - Directory Listing
Modified Thu May 10 14:44:56 2007 UTC (8 years, 11 months ago) by stehr
Removed wrong location for tagged version 0.3
Revision 36 - Directory Listing
Modified Thu May 10 14:44:01 2007 UTC (8 years, 11 months ago) by stehr
Tagged version 0.3
Revision 35 - Directory Listing
Modified Thu May 10 14:43:17 2007 UTC (8 years, 11 months ago) by stehr
Created directory for 0.3 tag
Revision 29 - Directory Listing
Modified Thu May 3 11:05:10 2007 UTC (9 years ago) by stehr
tagged version 0.2 (exported as jar file)

Revision 28 - Directory Listing
Modified Thu May 3 10:19:52 2007 UTC (9 years ago) by stehr
renamed tag from version0.1_byJuliane to CM2PyMol-0.1_byJuliane
Revision 22 - Directory Listing
Modified Wed Apr 11 08:30:18 2007 UTC (9 years ago) by stehr
tagged original version created by Juliane Dinse in Feb/Mar 2007

Revision 1 - Directory Listing
Added Wed Mar 14 09:18:10 2007 UTC (9 years, 1 month ago) by dinse
Initial import of the CM2PyMol project