--- trunk/README.TXT	2008/07/07 20:05:24	21
+++ trunk/README.TXT	2008/07/07 23:29:55	24
@@ -1,4 +1,4 @@
-FreeMOL Design Document
+FreeMOL Design Document (DRAFT ideas subject to further refinement)
 
 Goal: 
 
@@ -17,12 +17,31 @@
   freemol/man, and so forth) The FREEMOL environment variable should
   point at this directory.
 
+Compilation:
+
+  Assuming the the FREEMOL environment variable has been defined,
+  each package can be compiled and installed into $FREEMOL by cd'ing
+  to its souce directory and issuing the following sequence of commands:
+
+    ./configure
+    make
+    make install
+    
+  Followed by a 
+
+    make clean
+
+  to get rid of object code, intermediate files, etc.
+
 Deployment:
 
   A FreeMOL binary distribution would be a tar or zipped archive of
-  the freemol folder with executables compiled for a specific
-  architecture and which can be subsequently be located an relied upon
-  by PyMOL an other packages through the FREEMOL environment variable.
+  the $FREEMOL folder containing executables compiled for a specific
+  architecture.  
+
+  Installation would amount to extraction of the archive and setting
+  of the FREEMOL environment variable to that PyMOL and other packages
+  can subquently locate and rely upon the freemol executables.
 
 Pragmatic decisions:
 
@@ -33,12 +52,12 @@
 
 Confirmed FreeMOL Packages:
 
-  mengine
+  mengine (TJ)
+  mpeg_encode (Warren)
   
 Proposed FreeMOL Packages
 
   apbs
-  mpeg_encode
   python
   rdkit
   openbabel