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warnings
added charge-charge routines
added code for amber energy functions
added monitor tag and timer code to minimizer
KEG_OPENMP ext
add job_contro.h
major rewrite - removing global data, adding electrostatics tag to read_sdf
combine rings and srings to eliminate duplication
resolved problem in read_sdf, removed omp pragma in ehal
fixed corruption in mengine.c and bug in ehal.c
more cleanup and code removal
updated read_sdf type_mmx and first pass at using best practices
code merge 20081130
Add modification notice to files modified for Freemol per mengine/smi23d license requirements
add files for configure and make
move mengine src to reflect new freemol directory structure
Create new main program, mengine.c to replace gmmx.c simplifying command line parsing (none). Make mengine read stdin (sdf) and write stdout (sdf) instead of files. Makefile reflects change from gmmx to mengine.
test
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