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root/freemol/trunk/src/mengine/src/mengine.c
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# Line 54 | Line 54
54   void run_gmmx(void);
55   void search_rings(int);
56   */
57 <
57 > void initialize_pcmodel(char*);
58 > void initialize(void);
59 > void read_gmmxinp(char*, FILE*, int);
60  
61   void usage(void) {
62    fprintf(stderr,"\nUsage: mengine [-hvdxi] reads sdf on stdin, writes on stdout\n\n"
# Line 69 | Line 71
71   /* ==================================================== */
72   int main(int argc, char *argv[])
73   {
74 <    int i;
73 <    FILE *infile;
74 <    char *line = NULL;
74 >     FILE *infile;
75  
76      char *infilename = NULL;
77      char *outfilename = NULL;
# Line 81 | Line 81
81  
82      int c;
83      int flags = 0;
84    clock_t start_time,end_time;
84  
85      while ((c = getopt(argc, argv, "e:o:p:c:havdxi")) != -1) {
86        switch(c) {

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