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ran mmff94.sdf test suite on latest code - fixed errors in rings.c
added monitor tag and timer code to minimizer
further cleanup and localization of atom data
add job_contro.h
full dynamic memory allocation of molecule
major rewrite - removing global data, adding electrostatics tag to read_sdf
combine rings and srings to eliminate duplication
updated read_sdf type_mmx and first pass at using best practices
code merge 20081130
move mengine src to reflect new freemol directory structure
test
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