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root/freemol/trunk/src/pdb2pqr/src/Makefile.in.mingw
Revision: 54
Committed: Mon Sep 29 23:37:10 2008 UTC (11 years, 10 months ago) by tjod
File size: 28522 byte(s)
Log Message:
changes for mingw

Line User Rev File contents
1 tjod 54 # Makefile.in generated by automake 1.9.6 from Makefile.am.
2     # @configure_input@
3    
4     # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
5     # 2003, 2004, 2005 Free Software Foundation, Inc.
6     # This Makefile.in is free software; the Free Software Foundation
7     # gives unlimited permission to copy and/or distribute it,
8     # with or without modifications, as long as this notice is preserved.
9    
10     # This program is distributed in the hope that it will be useful,
11     # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12     # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
13     # PARTICULAR PURPOSE.
14    
15     @SET_MAKE@
16     srcdir = @srcdir@
17     top_srcdir = @top_srcdir@
18     VPATH = @srcdir@
19     pkgdatadir = $(datadir)/@PACKAGE@
20     pkglibdir = $(libdir)/@PACKAGE@
21     pkgincludedir = $(includedir)/@PACKAGE@
22     top_builddir = .
23     am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
24     INSTALL = @INSTALL@
25     install_sh_DATA = $(install_sh) -c -m 644
26     install_sh_PROGRAM = $(install_sh) -c
27     install_sh_SCRIPT = $(install_sh) -c
28     INSTALL_HEADER = $(INSTALL_DATA)
29     transform = $(program_transform_name)
30     NORMAL_INSTALL = :
31     PRE_INSTALL = :
32     POST_INSTALL = :
33     NORMAL_UNINSTALL = :
34     PRE_UNINSTALL = :
35     POST_UNINSTALL = :
36     build_triplet = @build@
37     host_triplet = @host@
38     target_triplet = @target@
39     DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \
40     $(srcdir)/Makefile.in $(top_srcdir)/configure AUTHORS COPYING \
41     ChangeLog INSTALL NEWS config/compile config/config.guess \
42     config/config.sub config/depcomp config/install-sh \
43     config/ltconfig config/ltmain.sh config/missing \
44     config/mkinstalldirs
45     subdir = .
46     ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
47     am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
48     $(top_srcdir)/configure.ac
49     am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
50     $(ACLOCAL_M4)
51     am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
52     configure.lineno configure.status.lineno
53     mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs
54     CONFIG_CLEAN_FILES =
55     depcomp =
56     am__depfiles_maybe =
57     SOURCES =
58     DIST_SOURCES =
59     RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
60     html-recursive info-recursive install-data-recursive \
61     install-exec-recursive install-info-recursive \
62     install-recursive installcheck-recursive installdirs-recursive \
63     pdf-recursive ps-recursive uninstall-info-recursive \
64     uninstall-recursive
65     ETAGS = etags
66     CTAGS = ctags
67     DIST_SUBDIRS = $(SUBDIRS)
68     DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
69     distdir = $(PACKAGE)-$(VERSION)
70     top_distdir = $(distdir)
71     am__remove_distdir = \
72     { test ! -d $(distdir) \
73     || { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \
74     && rm -fr $(distdir); }; }
75     DIST_ARCHIVES = $(distdir).tar.gz
76     GZIP_ENV = --best
77     distuninstallcheck_listfiles = find . -type f -print
78     distcleancheck_listfiles = find . -type f -print
79     ACLOCAL = @ACLOCAL@
80     AMDEP_FALSE = @AMDEP_FALSE@
81     AMDEP_TRUE = @AMDEP_TRUE@
82     AMTAR = @AMTAR@
83     AUTOCONF = @AUTOCONF@
84     AUTOHEADER = @AUTOHEADER@
85     AUTOMAKE = @AUTOMAKE@
86     AWK = @AWK@
87     CPPFLAGS = @CPPFLAGS@
88     CXX = @CXX@
89     CXXDEPMODE = @CXXDEPMODE@
90     CXXFLAGS = @CXXFLAGS@
91     CYGPATH_W = @CYGPATH_W@
92     DEFS = @DEFS@
93     DEPDIR = @DEPDIR@
94     ECHO_C = @ECHO_C@
95     ECHO_N = @ECHO_N@
96     ECHO_T = @ECHO_T@
97     EXEEXT = @EXEEXT@
98     INSTALL_DATA = @INSTALL_DATA@
99     INSTALL_PROGRAM = @INSTALL_PROGRAM@
100     INSTALL_SCRIPT = @INSTALL_SCRIPT@
101     INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
102     LDFLAGS = @LDFLAGS@
103     LIBOBJS = @LIBOBJS@
104     LIBS = @LIBS@
105     LTLIBOBJS = @LTLIBOBJS@
106     MAKEINFO = @MAKEINFO@
107     OBJEXT = @OBJEXT@
108     PACKAGE = @PACKAGE@
109     PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
110     PACKAGE_NAME = @PACKAGE_NAME@
111     PACKAGE_STRING = @PACKAGE_STRING@
112     PACKAGE_TARNAME = @PACKAGE_TARNAME@
113     PACKAGE_VERSION = @PACKAGE_VERSION@
114     PATH_SEPARATOR = @PATH_SEPARATOR@
115     PDB2PQR_SUBDIRS = @PDB2PQR_SUBDIRS@
116     PDB2PQR_VERSION = @PDB2PQR_VERSION@
117     PY_CFLAGS = @PY_CFLAGS@
118     PY_FLAGS = @PY_FLAGS@
119     PY_HEADER = @PY_HEADER@
120     PY_LDFLAGS = @PY_LDFLAGS@
121     PY_SHARED = @PY_SHARED@
122     SET_MAKE = @SET_MAKE@
123     SHELL = @SHELL@
124     STRIP = @STRIP@
125     URL = @URL@
126     VERSION = @VERSION@
127     ac_ct_CXX = @ac_ct_CXX@
128     action_install_var = @action_install_var@
129     am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
130     am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
131     am__include = @am__include@
132     am__leading_dot = @am__leading_dot@
133     am__quote = @am__quote@
134     am__tar = @am__tar@
135     am__untar = @am__untar@
136     bindir = @bindir@
137     build = @build@
138     build_alias = @build_alias@
139     build_cpu = @build_cpu@
140     build_os = @build_os@
141     build_vendor = @build_vendor@
142     datadir = @datadir@
143     datarootdir = @datarootdir@
144     docdir = @docdir@
145     dvidir = @dvidir@
146     exec_prefix = @exec_prefix@
147     host = @host@
148     host_alias = @host_alias@
149     host_cpu = @host_cpu@
150     host_os = @host_os@
151     host_vendor = @host_vendor@
152     htmldir = @htmldir@
153     includedir = @includedir@
154     infodir = @infodir@
155     install_dir_var = @install_dir_var@
156     install_sh = @install_sh@
157     last_prefix = @last_prefix@
158     last_website_install = @last_website_install@
159     libdir = @libdir@
160     libexecdir = @libexecdir@
161     localedir = @localedir@
162     localstatedir = @localstatedir@
163     mandir = @mandir@
164     mkdir_p = @mkdir_p@
165     oldincludedir = @oldincludedir@
166     pdfdir = @pdfdir@
167     prefix = @prefix@
168     program_transform_name = @program_transform_name@
169     psdir = @psdir@
170     py_path = @py_path@
171     sbindir = @sbindir@
172     sharedstatedir = @sharedstatedir@
173     sysconfdir = @sysconfdir@
174     target = @target@
175     target_alias = @target_alias@
176     target_cpu = @target_cpu@
177     target_os = @target_os@
178     target_vendor = @target_vendor@
179     website_install_var = @website_install_var@
180     with_pdb2pka = @with_pdb2pka@
181     with_propka = @with_propka@
182     AUTOMAKE_OPTIONS = no-dependencies
183     SUFFIXES = .H .h .C .cc .c .f .o
184     SUBDIRS = @PDB2PQR_SUBDIRS@
185     PREFIX = @prefix@
186     SRCDIR = @srcdir@
187     PROPKA = @with_propka@
188     PDB2PKA = @with_pdb2pka@
189     CWD = `pwd`
190     dirpath = $(CWD)/prefixfile
191     EXTRA_DIST = *.py *.css dat/* doc/* examples/* html/index.php html/master-index.html html/README \
192     html/server.html.in src/aa.py src/definitions.py src/forcefield.py src/hydrogens.py \
193     src/__init__.py src/inputgen.py src/na.py src/pdb.py src/protein.py src/psize.py \
194     src/quatfit.py src/routines.py src/server.py.in src/structures.py src/utilities.py \
195     tools/* pdb2pka/*.py pdb2pka/*.h pdb2pka/*.i pdb2pka/*.cpp pdb2pka/*.DAT \
196     pdb2pka/substruct/*.py pdb2pka/substruct/clique/* pdb2pka/ligandclean \
197     extensions/README extensions/template extensions/*.py propka/*.py propka/*.i \
198     tests/* pdb2pka/Makefile.in pdb2pka/Makefile.am
199    
200     all: all-recursive
201    
202     .SUFFIXES:
203     .SUFFIXES: .H .h .C .cc .c .f .o
204     am--refresh:
205     @:
206     $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
207     @for dep in $?; do \
208     case '$(am__configure_deps)' in \
209     *$$dep*) \
210     echo ' cd $(srcdir) && $(AUTOMAKE) --gnu '; \
211     cd $(srcdir) && $(AUTOMAKE) --gnu \
212     && exit 0; \
213     exit 1;; \
214     esac; \
215     done; \
216     echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \
217     cd $(top_srcdir) && \
218     $(AUTOMAKE) --gnu Makefile
219     .PRECIOUS: Makefile
220     Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
221     @case '$?' in \
222     *config.status*) \
223     echo ' $(SHELL) ./config.status'; \
224     $(SHELL) ./config.status;; \
225     *) \
226     echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \
227     cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
228     esac;
229    
230     $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
231     $(SHELL) ./config.status --recheck
232    
233     $(top_srcdir)/configure: $(am__configure_deps)
234     cd $(srcdir) && $(AUTOCONF)
235     $(ACLOCAL_M4): $(am__aclocal_m4_deps)
236     cd $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
237     uninstall-info-am:
238    
239     # This directory's subdirectories are mostly independent; you can cd
240     # into them and run `make' without going through this Makefile.
241     # To change the values of `make' variables: instead of editing Makefiles,
242     # (1) if the variable is set in `config.status', edit `config.status'
243     # (which will cause the Makefiles to be regenerated when you run `make');
244     # (2) otherwise, pass the desired values on the `make' command line.
245     $(RECURSIVE_TARGETS):
246     @failcom='exit 1'; \
247     for f in x $$MAKEFLAGS; do \
248     case $$f in \
249     *=* | --[!k]*);; \
250     *k*) failcom='fail=yes';; \
251     esac; \
252     done; \
253     dot_seen=no; \
254     target=`echo $@ | sed s/-recursive//`; \
255     list='$(SUBDIRS)'; for subdir in $$list; do \
256     echo "Making $$target in $$subdir"; \
257     if test "$$subdir" = "."; then \
258     dot_seen=yes; \
259     local_target="$$target-am"; \
260     else \
261     local_target="$$target"; \
262     fi; \
263     (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
264     || eval $$failcom; \
265     done; \
266     if test "$$dot_seen" = "no"; then \
267     $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
268     fi; test -z "$$fail"
269    
270     mostlyclean-recursive clean-recursive distclean-recursive \
271     maintainer-clean-recursive:
272     @failcom='exit 1'; \
273     for f in x $$MAKEFLAGS; do \
274     case $$f in \
275     *=* | --[!k]*);; \
276     *k*) failcom='fail=yes';; \
277     esac; \
278     done; \
279     dot_seen=no; \
280     case "$@" in \
281     distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
282     *) list='$(SUBDIRS)' ;; \
283     esac; \
284     rev=''; for subdir in $$list; do \
285     if test "$$subdir" = "."; then :; else \
286     rev="$$subdir $$rev"; \
287     fi; \
288     done; \
289     rev="$$rev ."; \
290     target=`echo $@ | sed s/-recursive//`; \
291     for subdir in $$rev; do \
292     echo "Making $$target in $$subdir"; \
293     if test "$$subdir" = "."; then \
294     local_target="$$target-am"; \
295     else \
296     local_target="$$target"; \
297     fi; \
298     (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
299     || eval $$failcom; \
300     done && test -z "$$fail"
301     tags-recursive:
302     list='$(SUBDIRS)'; for subdir in $$list; do \
303     test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
304     done
305     ctags-recursive:
306     list='$(SUBDIRS)'; for subdir in $$list; do \
307     test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
308     done
309    
310     ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
311     list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
312     unique=`for i in $$list; do \
313     if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
314     done | \
315     $(AWK) ' { files[$$0] = 1; } \
316     END { for (i in files) print i; }'`; \
317     mkid -fID $$unique
318     tags: TAGS
319    
320     TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
321     $(TAGS_FILES) $(LISP)
322     tags=; \
323     here=`pwd`; \
324     if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
325     include_option=--etags-include; \
326     empty_fix=.; \
327     else \
328     include_option=--include; \
329     empty_fix=; \
330     fi; \
331     list='$(SUBDIRS)'; for subdir in $$list; do \
332     if test "$$subdir" = .; then :; else \
333     test ! -f $$subdir/TAGS || \
334     tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
335     fi; \
336     done; \
337     list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
338     unique=`for i in $$list; do \
339     if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
340     done | \
341     $(AWK) ' { files[$$0] = 1; } \
342     END { for (i in files) print i; }'`; \
343     if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
344     test -n "$$unique" || unique=$$empty_fix; \
345     $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
346     $$tags $$unique; \
347     fi
348     ctags: CTAGS
349     CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
350     $(TAGS_FILES) $(LISP)
351     tags=; \
352     here=`pwd`; \
353     list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
354     unique=`for i in $$list; do \
355     if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
356     done | \
357     $(AWK) ' { files[$$0] = 1; } \
358     END { for (i in files) print i; }'`; \
359     test -z "$(CTAGS_ARGS)$$tags$$unique" \
360     || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
361     $$tags $$unique
362    
363     GTAGS:
364     here=`$(am__cd) $(top_builddir) && pwd` \
365     && cd $(top_srcdir) \
366     && gtags -i $(GTAGS_ARGS) $$here
367    
368     distclean-tags:
369     -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
370    
371     distdir: $(DISTFILES)
372     $(am__remove_distdir)
373     mkdir $(distdir)
374     $(mkdir_p) $(distdir)/config $(distdir)/dat $(distdir)/doc $(distdir)/examples $(distdir)/extensions $(distdir)/html $(distdir)/pdb2pka $(distdir)/pdb2pka/substruct $(distdir)/pdb2pka/substruct/clique $(distdir)/propka $(distdir)/src $(distdir)/tests $(distdir)/tools
375     @srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
376     topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
377     list='$(DISTFILES)'; for file in $$list; do \
378     case $$file in \
379     $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
380     $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
381     esac; \
382     if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
383     dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
384     if test "$$dir" != "$$file" && test "$$dir" != "."; then \
385     dir="/$$dir"; \
386     $(mkdir_p) "$(distdir)$$dir"; \
387     else \
388     dir=''; \
389     fi; \
390     if test -d $$d/$$file; then \
391     if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
392     cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
393     fi; \
394     cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
395     else \
396     test -f $(distdir)/$$file \
397     || cp -p $$d/$$file $(distdir)/$$file \
398     || exit 1; \
399     fi; \
400     done
401     list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
402     if test "$$subdir" = .; then :; else \
403     test -d "$(distdir)/$$subdir" \
404     || $(mkdir_p) "$(distdir)/$$subdir" \
405     || exit 1; \
406     distdir=`$(am__cd) $(distdir) && pwd`; \
407     top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
408     (cd $$subdir && \
409     $(MAKE) $(AM_MAKEFLAGS) \
410     top_distdir="$$top_distdir" \
411     distdir="$$distdir/$$subdir" \
412     distdir) \
413     || exit 1; \
414     fi; \
415     done
416     -find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
417     ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
418     ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
419     ! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \
420     || chmod -R a+r $(distdir)
421     dist-gzip: distdir
422     tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
423     $(am__remove_distdir)
424    
425     dist-bzip2: distdir
426     tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
427     $(am__remove_distdir)
428    
429     dist-tarZ: distdir
430     tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
431     $(am__remove_distdir)
432    
433     dist-shar: distdir
434     shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
435     $(am__remove_distdir)
436    
437     dist-zip: distdir
438     -rm -f $(distdir).zip
439     zip -rq $(distdir).zip $(distdir)
440     $(am__remove_distdir)
441    
442     dist dist-all: distdir
443     tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
444     $(am__remove_distdir)
445    
446     # This target untars the dist file and tries a VPATH configuration. Then
447     # it guarantees that the distribution is self-contained by making another
448     # tarfile.
449     distcheck: dist
450     case '$(DIST_ARCHIVES)' in \
451     *.tar.gz*) \
452     GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\
453     *.tar.bz2*) \
454     bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\
455     *.tar.Z*) \
456     uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
457     *.shar.gz*) \
458     GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
459     *.zip*) \
460     unzip $(distdir).zip ;;\
461     esac
462     chmod -R a-w $(distdir); chmod a+w $(distdir)
463     mkdir $(distdir)/_build
464     mkdir $(distdir)/_inst
465     chmod a-w $(distdir)
466     dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
467     && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
468     && cd $(distdir)/_build \
469     && ../configure --srcdir=.. --prefix="$$dc_install_base" \
470     $(DISTCHECK_CONFIGURE_FLAGS) \
471     && $(MAKE) $(AM_MAKEFLAGS) \
472     && $(MAKE) $(AM_MAKEFLAGS) dvi \
473     && $(MAKE) $(AM_MAKEFLAGS) check \
474     && $(MAKE) $(AM_MAKEFLAGS) install \
475     && $(MAKE) $(AM_MAKEFLAGS) installcheck \
476     && $(MAKE) $(AM_MAKEFLAGS) uninstall \
477     && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
478     distuninstallcheck \
479     && chmod -R a-w "$$dc_install_base" \
480     && ({ \
481     (cd ../.. && umask 077 && mkdir "$$dc_destdir") \
482     && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
483     && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
484     && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
485     distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
486     } || { rm -rf "$$dc_destdir"; exit 1; }) \
487     && rm -rf "$$dc_destdir" \
488     && $(MAKE) $(AM_MAKEFLAGS) dist \
489     && rm -rf $(DIST_ARCHIVES) \
490     && $(MAKE) $(AM_MAKEFLAGS) distcleancheck
491     $(am__remove_distdir)
492     @(echo "$(distdir) archives ready for distribution: "; \
493     list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
494     sed -e '1{h;s/./=/g;p;x;}' -e '$${p;x;}'
495     distuninstallcheck:
496     @cd $(distuninstallcheck_dir) \
497     && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
498     || { echo "ERROR: files left after uninstall:" ; \
499     if test -n "$(DESTDIR)"; then \
500     echo " (check DESTDIR support)"; \
501     fi ; \
502     $(distuninstallcheck_listfiles) ; \
503     exit 1; } >&2
504     distcleancheck: distclean
505     @if test '$(srcdir)' = . ; then \
506     echo "ERROR: distcleancheck can only run from a VPATH build" ; \
507     exit 1 ; \
508     fi
509     @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
510     || { echo "ERROR: files left in build directory after distclean:" ; \
511     $(distcleancheck_listfiles) ; \
512     exit 1; } >&2
513     check-am: all-am
514     check: check-recursive
515     all-am: Makefile
516     installdirs: installdirs-recursive
517     installdirs-am:
518     install-exec: install-exec-recursive
519     install-data: install-data-recursive
520     uninstall: uninstall-recursive
521    
522     install-am: all-am
523     @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
524    
525     installcheck: installcheck-recursive
526     install-strip:
527     $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
528     install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
529     `test -z '$(STRIP)' || \
530     echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
531     mostlyclean-generic:
532    
533     clean-generic:
534    
535     distclean-generic:
536     -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
537    
538     maintainer-clean-generic:
539     @echo "This command is intended for maintainers to use"
540     @echo "it deletes files that may require special tools to rebuild."
541     clean: clean-recursive
542    
543     clean-am: clean-generic clean-local mostlyclean-am
544    
545     distclean: distclean-recursive
546     -rm -f $(am__CONFIG_DISTCLEAN_FILES)
547     -rm -f Makefile
548     distclean-am: clean-am distclean-generic distclean-local \
549     distclean-tags
550    
551     dvi: dvi-recursive
552    
553     dvi-am:
554    
555     html: html-recursive
556    
557     info: info-recursive
558    
559     info-am:
560    
561     install-data-am:
562    
563     install-exec-am:
564    
565     install-info: install-info-recursive
566    
567     install-man:
568    
569     installcheck-am:
570    
571     maintainer-clean: maintainer-clean-recursive
572     -rm -f $(am__CONFIG_DISTCLEAN_FILES)
573     -rm -rf $(top_srcdir)/autom4te.cache
574     -rm -f Makefile
575     maintainer-clean-am: distclean-am maintainer-clean-generic
576    
577     mostlyclean: mostlyclean-recursive
578    
579     mostlyclean-am: mostlyclean-generic
580    
581     pdf: pdf-recursive
582    
583     pdf-am:
584    
585     ps: ps-recursive
586    
587     ps-am:
588    
589     uninstall-am: uninstall-info-am
590    
591     uninstall-info: uninstall-info-recursive
592    
593     .PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am am--refresh check \
594     check-am clean clean-generic clean-local clean-recursive ctags \
595     ctags-recursive dist dist-all dist-bzip2 dist-gzip dist-shar \
596     dist-tarZ dist-zip distcheck distclean distclean-generic \
597     distclean-local distclean-recursive distclean-tags \
598     distcleancheck distdir distuninstallcheck dvi dvi-am html \
599     html-am info info-am install install-am install-data \
600     install-data-am install-exec install-exec-am install-info \
601     install-info-am install-man install-strip installcheck \
602     installcheck-am installdirs installdirs-am maintainer-clean \
603     maintainer-clean-generic maintainer-clean-recursive \
604     mostlyclean mostlyclean-generic mostlyclean-recursive pdf \
605     pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \
606     uninstall-info-am
607    
608    
609     distclean-local: clean-local
610     clean-local: clean-ac
611     clean-ac:
612     -rm -rf autom4te.cache
613     distclean2:
614     -rm -rf src/server.py index.html html/server.html pdb2pqr.cgi tmp/ pdb2pka/*.o pdb2pka/*.so pdb2pka/substruct/*.so pdb2pka/substruct/*.o junk *~ tests/test/test-output-user* tests/test/test.sh tests/adv-test/test-output-user* tests/adv-test/test.sh
615    
616     test:
617     tests/test/test.sh
618    
619     adv-test:
620     tests/adv-test/test.sh
621    
622     install:
623     make
624     @if test "$(PREFIX)" == "$(CWD)/" ; then \
625     echo Your current source directory is the install directory. Nothing to be done. ; \
626     else \
627     c=`pwd`; \
628     echo $(PREFIX) > prefixfile ; \
629     awk -F"/" '{print NF-1}' ${dirpath} > fieldfile ; \
630     fields=`cat fieldfile`; \
631     awk -F"/" '{print $$NF}' ${dirpath} > lastfieldfile ; \
632     lastfield=`cat lastfieldfile`; \
633     if test -z $$lastfield; then \
634     fields=`expr $$fields - 1` ; \
635     fi ; \
636     dirpath=`pwd`; \
637     cd / ; \
638     awk -F"/" '{print $$2}' $$dirpath/prefixfile > $$dirpath/dir1file ; \
639     dir1=`cat $$dirpath/dir1file` ; \
640     if test -d $$dir1; then \
641     cd $$dir1 ; \
642     else \
643     if test -w .; then \
644     mkdir $$dir1 ; \
645     cd $$dir1 ; \
646     else \
647     echo You do not have permission to write in $$dir1. Ask your system administrator to make a symbolic link. Make sure the symbolic link has the same directory name as your PDB2PQR directory. ; \
648     exit 1 ;\
649     fi ; \
650     fi ; \
651     if test $$fields -eq 1 ; then \
652     dir=$$dir1 ; \
653     fi ; \
654     for (( i = 3 ; i <= $$fields+1; i++ )) ; \
655     do \
656     dir=`cat $$dirpath/prefixfile | cut -f$$i -d"/"` ; \
657     if test -d $$dir; then \
658     cd $$dir ;\
659     else \
660     if test -w .; then \
661     mkdir $$dir ; \
662     cd $$dir ; \
663     else \
664     echo You do not have permission to write in $$dir. Ask your system administrator to make a symoblic link. Make sure the symbolic link has the same directory name as your PDB2PQR directory ;\
665     exit 2 ; \
666     fi ; \
667     fi ; \
668     done ; \
669     cd .. ; \
670     chmod 755 $(CWD)/$$dir ; \
671     if ! test -d $(CWD)/$$dir/tmp ; then \
672     echo "Creating tmp/" ; \
673     mkdir $(CWD)/$$dir/tmp ; \
674     fi ; \
675     chmod 777 $(CWD)/$$dir/tmp ; \
676     echo "Adding server.html" ; \
677     cp $$c/html/server.html $(CWD)/$$dir/index.html ; \
678     echo "Adding python files" ; \
679     cp $$c/*.py* $(CWD)/$$dir/. ; \
680     echo "Adding __init__.py" ; \
681     cp $$c/__init__.py $(CWD)/$$dir/__init__.py ; \
682     echo "Adding pdb2pqr.py" ; \
683     cp $$c/pdb2pqr.py $(CWD)/$$dir/. ; \
684     echo "Adding pdb2pqr.cgi" ; \
685     cp $$c/pdb2pqr.cgi $(CWD)/$$dir/. ; \
686     echo "Adding pdb2pqr.css" ; \
687     cp $$c/pdb2pqr-opal.cgi $(CWD)/$$dir/. ; \
688     echo "Adding pdb2pqr-opal.cgi" ; \
689     cp $$c/querystatus.cgi $(CWD)/$$dir/. ; \
690     echo "Adding querystatus.cgi" ; \
691     cp $$c/pdb2pqr.css $(CWD)/$$dir/. ; \
692     if ! test -d $(CWD)/$$dir/dat ; then \
693     mkdir $(CWD)/$$dir/dat ; \
694     fi ; \
695     echo "Adding dat/" ; \
696     cp $$c/dat/*.xml $(CWD)/$$dir/dat/. ; \
697     cp $$c/dat/*.DAT $(CWD)/$$dir/dat/. ; \
698     cp $$c/dat/*.names $(CWD)/$$dir/dat/. ; \
699     if ! test -d $(CWD)/$$dir/doc ; then \
700     mkdir $(CWD)/$$dir/doc ; \
701     fi ; \
702     echo "Adding doc/" ; \
703     cp $$c/doc/*.html $(CWD)/$$dir/doc/. ; \
704     cp $$c/doc/*.sh $(CWD)/$$dir/doc/. ; \
705     if ! test -d $(CWD)/$$dir/doc/images ; then \
706     mkdir $(CWD)/$$dir/doc/images ; \
707     fi ; \
708     cp $$c/doc/images/*.png $(CWD)/$$dir/doc/images/. ; \
709     if ! test -d $(CWD)/$$dir/doc/pydoc ; then \
710     mkdir $(CWD)/$$dir/doc/pydoc ; \
711     fi ; \
712     cp $$c/doc/pydoc/*.html $(CWD)/$$dir/doc/pydoc/. ; \
713     if ! test -d $(CWD)/$$dir/examples ; then \
714     mkdir $(CWD)/$$dir/examples ; \
715     fi ; \
716     echo "Adding examples/" ; \
717     cp $$c/examples/*.html $(CWD)/$$dir/examples/. ; \
718     if ! test -d $(CWD)/$$dir/examples/1a1p ; then \
719     mkdir $(CWD)/$$dir/examples/1a1p ; \
720     fi ; \
721     cp $$c/examples/1a1p/*.pdb $(CWD)/$$dir/examples/1a1p/. ; \
722     cp $$c/examples/1a1p/README $(CWD)/$$dir/examples/1a1p/. ; \
723     if ! test -d $(CWD)/$$dir/examples/ligands ; then \
724     mkdir $(CWD)/$$dir/examples/ligands ; \
725     fi ; \
726     cp $$c/examples/ligands/*.mol* $(CWD)/$$dir/examples/ligands/. ; \
727     if ! test -d $(CWD)/$$dir/extensions ; then \
728     mkdir $(CWD)/$$dir/extensions ; \
729     fi ; \
730     echo "Adding extensions" ; \
731     cp $$c/extensions/*.py $(CWD)/$$dir/extensions/. ; \
732     if ! test -d $(CWD)/$$dir/html ; then \
733     mkdir $(CWD)/$$dir/html ; \
734     fi ; \
735     cp $$c/html/index.php $(CWD)/$$dir/html/. ; \
736     cp $$c/html/master-index.html $(CWD)/$$dir/html/. ; \
737     cp $$c/html/server.html $(CWD)/$$dir/html/server.html ; \
738     if ! test -d $(CWD)/$$dir/src ; then \
739     mkdir $(CWD)/$$dir/src ; \
740     fi ; \
741     echo "Adding python files from src/" ; \
742     cp $$c/src/*.py* $(CWD)/$$dir/src/. ; \
743     cp $$c/src/server.py $(CWD)/$$dir/src/server.py ; \
744     if test "$(PROPKA)" == "enable" ; then \
745     if ! test -d $(CWD)/$$dir/propka ; then \
746     mkdir $(CWD)/$$dir/propka ; \
747     fi ; \
748     echo "Adding propka"; \
749     cp $$c/propka/propka $(CWD)/$$dir/propka/. ; \
750     cp $$c/propka/propkalib.i $(CWD)/$$dir/propka/. ; \
751     cp $$c/propka/*.py $(CWD)/$$dir/propka/. ; \
752     cp $$c/propka/*.so $(CWD)/$$dir/propka/. ; \
753     fi ; \
754     if test "$(PDB2PKA)" == "enable" ; then \
755     if ! test -d $(CWD)/$$dir/pdb2pka ; then \
756     mkdir $(CWD)/$$dir/pdb2pka ; \
757     fi ; \
758     echo "Adding pdb2pka" ; \
759     cp $$c/pdb2pka/*.so $(CWD)/$$dir/pdb2pka/. ; \
760     cp $$c/pdb2pka/*.py $(CWD)/$$dir/pdb2pka/. ; \
761     cp $$c/pdb2pka/*.DAT $(CWD)/$$dir/pdb2pka/. ; \
762     cp $$c/pdb2pka/*.h $(CWD)/$$dir/pdb2pka/. ; \
763     cp $$c/pdb2pka/*.i $(CWD)/$$dir/pdb2pka/. ; \
764     if ! test -d $(CWD)/$$dir/pdb2pka/ligandclean ; then \
765     mkdir $(CWD)/$$dir/pdb2pka/ligandclean ; \
766     fi ; \
767     cp -rf $$c/pdb2pka/ligandclean/*.py $(CWD)/$$dir/pdb2pka/ligandclean/. ; \
768     if ! test -d $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes ; then \
769     mkdir $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes ; \
770     fi ; \
771     cp -rf $$c/pdb2pka/ligandclean/testcomplexes/*.pdb $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes/. ; \
772     cp -rf $$c/pdb2pka/ligandclean/testcomplexes/*.mol* $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes/. ; \
773     if ! test -d $(CWD)/$$dir/pdb2pka/substruct ; then \
774     mkdir $(CWD)/$$dir/pdb2pka/substruct ; \
775     fi ; \
776     cp $$c/pdb2pka/substruct/*.py $(CWD)/$$dir/pdb2pka/substruct/. ; \
777     cp $$c/pdb2pka/substruct/*.so $(CWD)/$$dir/pdb2pka/substruct/. ; \
778     if ! test -d $(CWD)/$$dir/pdb2pka/substruct/clique ; then \
779     mkdir $(CWD)/$$dir/pdb2pka/substruct/clique ; \
780     fi ; \
781     cp $$c/pdb2pka/substruct/clique/*.h $(CWD)/$$dir/pdb2pka/substruct/clique/. ; \
782     fi ; \
783     echo PDB2PQR has been installed in $(CWD)/$$dir ; \
784     echo ; \
785     cd $(CWD)/$$dir ; \
786     cd $$c; \
787     rm lastfieldfile prefixfile dir1file fieldfile ; \
788     echo $(URL) > url_file ; \
789     awk -F"/" '{print $$(NF-1)}' url_file > url_file_2 ; \
790     last_url=`cat url_file_2` ; \
791     echo $(PREFIX) > p_file ; \
792     awk -F"/" '{print $$(NF-1)}' p_file > p_file_2 ; \
793     last_p=`cat p_file_2` ; \
794     rm -f url_file* p_file* ; \
795     if test `whoami` = "root" ; then \
796     webviewable="true" ; \
797     echo ${prefix} > prefix_file_tmp ; \
798     first=`awk -F"/" '{ print $$2 }' prefix_file_tmp` ; \
799     second=`awk -F"/" '{ print $$3 }' prefix_file_tmp` ; \
800     third=`awk -F"/" '{ print $$4 }' prefix_file_tmp` ; \
801     rm -f prefix_file_tmp ; \
802     if test $$first != var || test $$second != www || test $$third != html ; then \
803     webviewable=false ; \
804     fi ; \
805     if test "$$last_url" != "$$last_p" || test "$$webviewable" = "false" ; then \
806     echo Need to make symbolic link between $(PREFIX) and /var/www/html/"$$last_url" ; \
807     if test -d "/var/www/html/$$last_url" ; then \
808     echo "***" Warning! Directory /var/www/html/"$$last_url" already exists. ; \
809     echo Do you want to overwrite this? \(Y/N\); \
810     read choice ; \
811     while (test $$choice != "Y" && test $$choice != "y" && test $$choice != "N" && test $$choice != "n") \
812     do \
813     echo You have entered $$choice. Please enter Y or N: ; \
814     read choice ; \
815     done ; \
816     if test $$choice = "N" || test $$choice = "n" ; then \
817     echo Please run configure again and specify a different --prefix ; \
818     exit 0 ; \
819     fi ; \
820     rm -rf /var/www/html/"$$last_url" ; \
821     fi ; \
822     ln -s $(PREFIX) /var/www/html/"$$last_url" ; \
823     echo "Symbolic link created." ; \
824     fi ; \
825     else \
826     echo Ask your system administrator to make a symbolic link in /var/www/html by executing the following command; \
827     echo ln -s $(PREFIX) /var/www/html/"$$last_url" ; \
828     fi ; \
829     fi
830     # Tell versions [3.59,3.63) of GNU make to not export all variables.
831     # Otherwise a system limit (for SysV at least) may be exceeded.
832     .NOEXPORT:

Properties

Name Value
svn:executable *