| 1 |
# Makefile.in generated by automake 1.9.6 from Makefile.am. |
| 2 |
# @configure_input@ |
| 3 |
|
| 4 |
# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, |
| 5 |
# 2003, 2004, 2005 Free Software Foundation, Inc. |
| 6 |
# This Makefile.in is free software; the Free Software Foundation |
| 7 |
# gives unlimited permission to copy and/or distribute it, |
| 8 |
# with or without modifications, as long as this notice is preserved. |
| 9 |
|
| 10 |
# This program is distributed in the hope that it will be useful, |
| 11 |
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without |
| 12 |
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A |
| 13 |
# PARTICULAR PURPOSE. |
| 14 |
|
| 15 |
@SET_MAKE@ |
| 16 |
srcdir = @srcdir@ |
| 17 |
top_srcdir = @top_srcdir@ |
| 18 |
VPATH = @srcdir@ |
| 19 |
pkgdatadir = $(datadir)/@PACKAGE@ |
| 20 |
pkglibdir = $(libdir)/@PACKAGE@ |
| 21 |
pkgincludedir = $(includedir)/@PACKAGE@ |
| 22 |
top_builddir = . |
| 23 |
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd |
| 24 |
INSTALL = @INSTALL@ |
| 25 |
install_sh_DATA = $(install_sh) -c -m 644 |
| 26 |
install_sh_PROGRAM = $(install_sh) -c |
| 27 |
install_sh_SCRIPT = $(install_sh) -c |
| 28 |
INSTALL_HEADER = $(INSTALL_DATA) |
| 29 |
transform = $(program_transform_name) |
| 30 |
NORMAL_INSTALL = : |
| 31 |
PRE_INSTALL = : |
| 32 |
POST_INSTALL = : |
| 33 |
NORMAL_UNINSTALL = : |
| 34 |
PRE_UNINSTALL = : |
| 35 |
POST_UNINSTALL = : |
| 36 |
build_triplet = @build@ |
| 37 |
host_triplet = @host@ |
| 38 |
target_triplet = @target@ |
| 39 |
DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \ |
| 40 |
$(srcdir)/Makefile.in $(top_srcdir)/configure AUTHORS COPYING \ |
| 41 |
ChangeLog INSTALL NEWS config/compile config/config.guess \ |
| 42 |
config/config.sub config/depcomp config/install-sh \ |
| 43 |
config/ltconfig config/ltmain.sh config/missing \ |
| 44 |
config/mkinstalldirs |
| 45 |
subdir = . |
| 46 |
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 |
| 47 |
am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \ |
| 48 |
$(top_srcdir)/configure.ac |
| 49 |
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ |
| 50 |
$(ACLOCAL_M4) |
| 51 |
am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \ |
| 52 |
configure.lineno configure.status.lineno |
| 53 |
mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs |
| 54 |
CONFIG_CLEAN_FILES = |
| 55 |
depcomp = |
| 56 |
am__depfiles_maybe = |
| 57 |
SOURCES = |
| 58 |
DIST_SOURCES = |
| 59 |
RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ |
| 60 |
html-recursive info-recursive install-data-recursive \ |
| 61 |
install-exec-recursive install-info-recursive \ |
| 62 |
install-recursive installcheck-recursive installdirs-recursive \ |
| 63 |
pdf-recursive ps-recursive uninstall-info-recursive \ |
| 64 |
uninstall-recursive |
| 65 |
ETAGS = etags |
| 66 |
CTAGS = ctags |
| 67 |
DIST_SUBDIRS = $(SUBDIRS) |
| 68 |
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) |
| 69 |
distdir = $(PACKAGE)-$(VERSION) |
| 70 |
top_distdir = $(distdir) |
| 71 |
am__remove_distdir = \ |
| 72 |
{ test ! -d $(distdir) \ |
| 73 |
|| { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \ |
| 74 |
&& rm -fr $(distdir); }; } |
| 75 |
DIST_ARCHIVES = $(distdir).tar.gz |
| 76 |
GZIP_ENV = --best |
| 77 |
distuninstallcheck_listfiles = find . -type f -print |
| 78 |
distcleancheck_listfiles = find . -type f -print |
| 79 |
ACLOCAL = @ACLOCAL@ |
| 80 |
AMDEP_FALSE = @AMDEP_FALSE@ |
| 81 |
AMDEP_TRUE = @AMDEP_TRUE@ |
| 82 |
AMTAR = @AMTAR@ |
| 83 |
AUTOCONF = @AUTOCONF@ |
| 84 |
AUTOHEADER = @AUTOHEADER@ |
| 85 |
AUTOMAKE = @AUTOMAKE@ |
| 86 |
AWK = @AWK@ |
| 87 |
CPPFLAGS = @CPPFLAGS@ |
| 88 |
CXX = @CXX@ |
| 89 |
CXXDEPMODE = @CXXDEPMODE@ |
| 90 |
CXXFLAGS = @CXXFLAGS@ |
| 91 |
CYGPATH_W = @CYGPATH_W@ |
| 92 |
DEFS = @DEFS@ |
| 93 |
DEPDIR = @DEPDIR@ |
| 94 |
ECHO_C = @ECHO_C@ |
| 95 |
ECHO_N = @ECHO_N@ |
| 96 |
ECHO_T = @ECHO_T@ |
| 97 |
EXEEXT = @EXEEXT@ |
| 98 |
INSTALL_DATA = @INSTALL_DATA@ |
| 99 |
INSTALL_PROGRAM = @INSTALL_PROGRAM@ |
| 100 |
INSTALL_SCRIPT = @INSTALL_SCRIPT@ |
| 101 |
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ |
| 102 |
LDFLAGS = @LDFLAGS@ |
| 103 |
LIBOBJS = @LIBOBJS@ |
| 104 |
LIBS = @LIBS@ |
| 105 |
LTLIBOBJS = @LTLIBOBJS@ |
| 106 |
MAKEINFO = @MAKEINFO@ |
| 107 |
OBJEXT = @OBJEXT@ |
| 108 |
PACKAGE = @PACKAGE@ |
| 109 |
PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ |
| 110 |
PACKAGE_NAME = @PACKAGE_NAME@ |
| 111 |
PACKAGE_STRING = @PACKAGE_STRING@ |
| 112 |
PACKAGE_TARNAME = @PACKAGE_TARNAME@ |
| 113 |
PACKAGE_VERSION = @PACKAGE_VERSION@ |
| 114 |
PATH_SEPARATOR = @PATH_SEPARATOR@ |
| 115 |
PDB2PQR_SUBDIRS = @PDB2PQR_SUBDIRS@ |
| 116 |
PDB2PQR_VERSION = @PDB2PQR_VERSION@ |
| 117 |
PY_CFLAGS = @PY_CFLAGS@ |
| 118 |
PY_FLAGS = @PY_FLAGS@ |
| 119 |
PY_HEADER = @PY_HEADER@ |
| 120 |
PY_LDFLAGS = @PY_LDFLAGS@ |
| 121 |
PY_SHARED = @PY_SHARED@ |
| 122 |
SET_MAKE = @SET_MAKE@ |
| 123 |
SHELL = @SHELL@ |
| 124 |
STRIP = @STRIP@ |
| 125 |
URL = @URL@ |
| 126 |
VERSION = @VERSION@ |
| 127 |
ac_ct_CXX = @ac_ct_CXX@ |
| 128 |
action_install_var = @action_install_var@ |
| 129 |
am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@ |
| 130 |
am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@ |
| 131 |
am__include = @am__include@ |
| 132 |
am__leading_dot = @am__leading_dot@ |
| 133 |
am__quote = @am__quote@ |
| 134 |
am__tar = @am__tar@ |
| 135 |
am__untar = @am__untar@ |
| 136 |
bindir = @bindir@ |
| 137 |
build = @build@ |
| 138 |
build_alias = @build_alias@ |
| 139 |
build_cpu = @build_cpu@ |
| 140 |
build_os = @build_os@ |
| 141 |
build_vendor = @build_vendor@ |
| 142 |
datadir = @datadir@ |
| 143 |
datarootdir = @datarootdir@ |
| 144 |
docdir = @docdir@ |
| 145 |
dvidir = @dvidir@ |
| 146 |
exec_prefix = @exec_prefix@ |
| 147 |
host = @host@ |
| 148 |
host_alias = @host_alias@ |
| 149 |
host_cpu = @host_cpu@ |
| 150 |
host_os = @host_os@ |
| 151 |
host_vendor = @host_vendor@ |
| 152 |
htmldir = @htmldir@ |
| 153 |
includedir = @includedir@ |
| 154 |
infodir = @infodir@ |
| 155 |
install_dir_var = @install_dir_var@ |
| 156 |
install_sh = @install_sh@ |
| 157 |
last_prefix = @last_prefix@ |
| 158 |
last_website_install = @last_website_install@ |
| 159 |
libdir = @libdir@ |
| 160 |
libexecdir = @libexecdir@ |
| 161 |
localedir = @localedir@ |
| 162 |
localstatedir = @localstatedir@ |
| 163 |
mandir = @mandir@ |
| 164 |
mkdir_p = @mkdir_p@ |
| 165 |
oldincludedir = @oldincludedir@ |
| 166 |
pdfdir = @pdfdir@ |
| 167 |
prefix = @prefix@ |
| 168 |
program_transform_name = @program_transform_name@ |
| 169 |
psdir = @psdir@ |
| 170 |
py_path = @py_path@ |
| 171 |
sbindir = @sbindir@ |
| 172 |
sharedstatedir = @sharedstatedir@ |
| 173 |
sysconfdir = @sysconfdir@ |
| 174 |
target = @target@ |
| 175 |
target_alias = @target_alias@ |
| 176 |
target_cpu = @target_cpu@ |
| 177 |
target_os = @target_os@ |
| 178 |
target_vendor = @target_vendor@ |
| 179 |
website_install_var = @website_install_var@ |
| 180 |
with_pdb2pka = @with_pdb2pka@ |
| 181 |
with_propka = @with_propka@ |
| 182 |
AUTOMAKE_OPTIONS = no-dependencies |
| 183 |
SUFFIXES = .H .h .C .cc .c .f .o |
| 184 |
SUBDIRS = @PDB2PQR_SUBDIRS@ |
| 185 |
PREFIX = @prefix@ |
| 186 |
SRCDIR = @srcdir@ |
| 187 |
PROPKA = @with_propka@ |
| 188 |
PDB2PKA = @with_pdb2pka@ |
| 189 |
CWD = `pwd` |
| 190 |
dirpath = $(CWD)/prefixfile |
| 191 |
EXTRA_DIST = *.py *.css dat/* doc/* examples/* html/index.php html/master-index.html html/README \ |
| 192 |
html/server.html.in src/aa.py src/definitions.py src/forcefield.py src/hydrogens.py \ |
| 193 |
src/__init__.py src/inputgen.py src/na.py src/pdb.py src/protein.py src/psize.py \ |
| 194 |
src/quatfit.py src/routines.py src/server.py.in src/structures.py src/utilities.py \ |
| 195 |
tools/* pdb2pka/*.py pdb2pka/*.h pdb2pka/*.i pdb2pka/*.cpp pdb2pka/*.DAT \ |
| 196 |
pdb2pka/substruct/*.py pdb2pka/substruct/clique/* pdb2pka/ligandclean \ |
| 197 |
extensions/README extensions/template extensions/*.py propka/*.py propka/*.i \ |
| 198 |
tests/* pdb2pka/Makefile.in pdb2pka/Makefile.am |
| 199 |
|
| 200 |
all: all-recursive |
| 201 |
|
| 202 |
.SUFFIXES: |
| 203 |
.SUFFIXES: .H .h .C .cc .c .f .o |
| 204 |
am--refresh: |
| 205 |
@: |
| 206 |
$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps) |
| 207 |
@for dep in $?; do \ |
| 208 |
case '$(am__configure_deps)' in \ |
| 209 |
*$$dep*) \ |
| 210 |
echo ' cd $(srcdir) && $(AUTOMAKE) --gnu '; \ |
| 211 |
cd $(srcdir) && $(AUTOMAKE) --gnu \ |
| 212 |
&& exit 0; \ |
| 213 |
exit 1;; \ |
| 214 |
esac; \ |
| 215 |
done; \ |
| 216 |
echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \ |
| 217 |
cd $(top_srcdir) && \ |
| 218 |
$(AUTOMAKE) --gnu Makefile |
| 219 |
.PRECIOUS: Makefile |
| 220 |
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status |
| 221 |
@case '$?' in \ |
| 222 |
*config.status*) \ |
| 223 |
echo ' $(SHELL) ./config.status'; \ |
| 224 |
$(SHELL) ./config.status;; \ |
| 225 |
*) \ |
| 226 |
echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \ |
| 227 |
cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \ |
| 228 |
esac; |
| 229 |
|
| 230 |
$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) |
| 231 |
$(SHELL) ./config.status --recheck |
| 232 |
|
| 233 |
$(top_srcdir)/configure: $(am__configure_deps) |
| 234 |
cd $(srcdir) && $(AUTOCONF) |
| 235 |
$(ACLOCAL_M4): $(am__aclocal_m4_deps) |
| 236 |
cd $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS) |
| 237 |
uninstall-info-am: |
| 238 |
|
| 239 |
# This directory's subdirectories are mostly independent; you can cd |
| 240 |
# into them and run `make' without going through this Makefile. |
| 241 |
# To change the values of `make' variables: instead of editing Makefiles, |
| 242 |
# (1) if the variable is set in `config.status', edit `config.status' |
| 243 |
# (which will cause the Makefiles to be regenerated when you run `make'); |
| 244 |
# (2) otherwise, pass the desired values on the `make' command line. |
| 245 |
$(RECURSIVE_TARGETS): |
| 246 |
@failcom='exit 1'; \ |
| 247 |
for f in x $$MAKEFLAGS; do \ |
| 248 |
case $$f in \ |
| 249 |
*=* | --[!k]*);; \ |
| 250 |
*k*) failcom='fail=yes';; \ |
| 251 |
esac; \ |
| 252 |
done; \ |
| 253 |
dot_seen=no; \ |
| 254 |
target=`echo $@ | sed s/-recursive//`; \ |
| 255 |
list='$(SUBDIRS)'; for subdir in $$list; do \ |
| 256 |
echo "Making $$target in $$subdir"; \ |
| 257 |
if test "$$subdir" = "."; then \ |
| 258 |
dot_seen=yes; \ |
| 259 |
local_target="$$target-am"; \ |
| 260 |
else \ |
| 261 |
local_target="$$target"; \ |
| 262 |
fi; \ |
| 263 |
(cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ |
| 264 |
|| eval $$failcom; \ |
| 265 |
done; \ |
| 266 |
if test "$$dot_seen" = "no"; then \ |
| 267 |
$(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ |
| 268 |
fi; test -z "$$fail" |
| 269 |
|
| 270 |
mostlyclean-recursive clean-recursive distclean-recursive \ |
| 271 |
maintainer-clean-recursive: |
| 272 |
@failcom='exit 1'; \ |
| 273 |
for f in x $$MAKEFLAGS; do \ |
| 274 |
case $$f in \ |
| 275 |
*=* | --[!k]*);; \ |
| 276 |
*k*) failcom='fail=yes';; \ |
| 277 |
esac; \ |
| 278 |
done; \ |
| 279 |
dot_seen=no; \ |
| 280 |
case "$@" in \ |
| 281 |
distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ |
| 282 |
*) list='$(SUBDIRS)' ;; \ |
| 283 |
esac; \ |
| 284 |
rev=''; for subdir in $$list; do \ |
| 285 |
if test "$$subdir" = "."; then :; else \ |
| 286 |
rev="$$subdir $$rev"; \ |
| 287 |
fi; \ |
| 288 |
done; \ |
| 289 |
rev="$$rev ."; \ |
| 290 |
target=`echo $@ | sed s/-recursive//`; \ |
| 291 |
for subdir in $$rev; do \ |
| 292 |
echo "Making $$target in $$subdir"; \ |
| 293 |
if test "$$subdir" = "."; then \ |
| 294 |
local_target="$$target-am"; \ |
| 295 |
else \ |
| 296 |
local_target="$$target"; \ |
| 297 |
fi; \ |
| 298 |
(cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ |
| 299 |
|| eval $$failcom; \ |
| 300 |
done && test -z "$$fail" |
| 301 |
tags-recursive: |
| 302 |
list='$(SUBDIRS)'; for subdir in $$list; do \ |
| 303 |
test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ |
| 304 |
done |
| 305 |
ctags-recursive: |
| 306 |
list='$(SUBDIRS)'; for subdir in $$list; do \ |
| 307 |
test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ |
| 308 |
done |
| 309 |
|
| 310 |
ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) |
| 311 |
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ |
| 312 |
unique=`for i in $$list; do \ |
| 313 |
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ |
| 314 |
done | \ |
| 315 |
$(AWK) ' { files[$$0] = 1; } \ |
| 316 |
END { for (i in files) print i; }'`; \ |
| 317 |
mkid -fID $$unique |
| 318 |
tags: TAGS |
| 319 |
|
| 320 |
TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ |
| 321 |
$(TAGS_FILES) $(LISP) |
| 322 |
tags=; \ |
| 323 |
here=`pwd`; \ |
| 324 |
if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \ |
| 325 |
include_option=--etags-include; \ |
| 326 |
empty_fix=.; \ |
| 327 |
else \ |
| 328 |
include_option=--include; \ |
| 329 |
empty_fix=; \ |
| 330 |
fi; \ |
| 331 |
list='$(SUBDIRS)'; for subdir in $$list; do \ |
| 332 |
if test "$$subdir" = .; then :; else \ |
| 333 |
test ! -f $$subdir/TAGS || \ |
| 334 |
tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \ |
| 335 |
fi; \ |
| 336 |
done; \ |
| 337 |
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ |
| 338 |
unique=`for i in $$list; do \ |
| 339 |
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ |
| 340 |
done | \ |
| 341 |
$(AWK) ' { files[$$0] = 1; } \ |
| 342 |
END { for (i in files) print i; }'`; \ |
| 343 |
if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ |
| 344 |
test -n "$$unique" || unique=$$empty_fix; \ |
| 345 |
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ |
| 346 |
$$tags $$unique; \ |
| 347 |
fi |
| 348 |
ctags: CTAGS |
| 349 |
CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ |
| 350 |
$(TAGS_FILES) $(LISP) |
| 351 |
tags=; \ |
| 352 |
here=`pwd`; \ |
| 353 |
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ |
| 354 |
unique=`for i in $$list; do \ |
| 355 |
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ |
| 356 |
done | \ |
| 357 |
$(AWK) ' { files[$$0] = 1; } \ |
| 358 |
END { for (i in files) print i; }'`; \ |
| 359 |
test -z "$(CTAGS_ARGS)$$tags$$unique" \ |
| 360 |
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ |
| 361 |
$$tags $$unique |
| 362 |
|
| 363 |
GTAGS: |
| 364 |
here=`$(am__cd) $(top_builddir) && pwd` \ |
| 365 |
&& cd $(top_srcdir) \ |
| 366 |
&& gtags -i $(GTAGS_ARGS) $$here |
| 367 |
|
| 368 |
distclean-tags: |
| 369 |
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags |
| 370 |
|
| 371 |
distdir: $(DISTFILES) |
| 372 |
$(am__remove_distdir) |
| 373 |
mkdir $(distdir) |
| 374 |
$(mkdir_p) $(distdir)/config $(distdir)/dat $(distdir)/doc $(distdir)/examples $(distdir)/extensions $(distdir)/html $(distdir)/pdb2pka $(distdir)/pdb2pka/substruct $(distdir)/pdb2pka/substruct/clique $(distdir)/propka $(distdir)/src $(distdir)/tests $(distdir)/tools |
| 375 |
@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \ |
| 376 |
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \ |
| 377 |
list='$(DISTFILES)'; for file in $$list; do \ |
| 378 |
case $$file in \ |
| 379 |
$(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \ |
| 380 |
$(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \ |
| 381 |
esac; \ |
| 382 |
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ |
| 383 |
dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \ |
| 384 |
if test "$$dir" != "$$file" && test "$$dir" != "."; then \ |
| 385 |
dir="/$$dir"; \ |
| 386 |
$(mkdir_p) "$(distdir)$$dir"; \ |
| 387 |
else \ |
| 388 |
dir=''; \ |
| 389 |
fi; \ |
| 390 |
if test -d $$d/$$file; then \ |
| 391 |
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ |
| 392 |
cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ |
| 393 |
fi; \ |
| 394 |
cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ |
| 395 |
else \ |
| 396 |
test -f $(distdir)/$$file \ |
| 397 |
|| cp -p $$d/$$file $(distdir)/$$file \ |
| 398 |
|| exit 1; \ |
| 399 |
fi; \ |
| 400 |
done |
| 401 |
list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ |
| 402 |
if test "$$subdir" = .; then :; else \ |
| 403 |
test -d "$(distdir)/$$subdir" \ |
| 404 |
|| $(mkdir_p) "$(distdir)/$$subdir" \ |
| 405 |
|| exit 1; \ |
| 406 |
distdir=`$(am__cd) $(distdir) && pwd`; \ |
| 407 |
top_distdir=`$(am__cd) $(top_distdir) && pwd`; \ |
| 408 |
(cd $$subdir && \ |
| 409 |
$(MAKE) $(AM_MAKEFLAGS) \ |
| 410 |
top_distdir="$$top_distdir" \ |
| 411 |
distdir="$$distdir/$$subdir" \ |
| 412 |
distdir) \ |
| 413 |
|| exit 1; \ |
| 414 |
fi; \ |
| 415 |
done |
| 416 |
-find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \ |
| 417 |
! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \ |
| 418 |
! -type d ! -perm -400 -exec chmod a+r {} \; -o \ |
| 419 |
! -type d ! -perm -444 -exec $(SHELL) $(install_sh) -c -m a+r {} {} \; \ |
| 420 |
|| chmod -R a+r $(distdir) |
| 421 |
dist-gzip: distdir |
| 422 |
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz |
| 423 |
$(am__remove_distdir) |
| 424 |
|
| 425 |
dist-bzip2: distdir |
| 426 |
tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2 |
| 427 |
$(am__remove_distdir) |
| 428 |
|
| 429 |
dist-tarZ: distdir |
| 430 |
tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z |
| 431 |
$(am__remove_distdir) |
| 432 |
|
| 433 |
dist-shar: distdir |
| 434 |
shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz |
| 435 |
$(am__remove_distdir) |
| 436 |
|
| 437 |
dist-zip: distdir |
| 438 |
-rm -f $(distdir).zip |
| 439 |
zip -rq $(distdir).zip $(distdir) |
| 440 |
$(am__remove_distdir) |
| 441 |
|
| 442 |
dist dist-all: distdir |
| 443 |
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz |
| 444 |
$(am__remove_distdir) |
| 445 |
|
| 446 |
# This target untars the dist file and tries a VPATH configuration. Then |
| 447 |
# it guarantees that the distribution is self-contained by making another |
| 448 |
# tarfile. |
| 449 |
distcheck: dist |
| 450 |
case '$(DIST_ARCHIVES)' in \ |
| 451 |
*.tar.gz*) \ |
| 452 |
GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\ |
| 453 |
*.tar.bz2*) \ |
| 454 |
bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\ |
| 455 |
*.tar.Z*) \ |
| 456 |
uncompress -c $(distdir).tar.Z | $(am__untar) ;;\ |
| 457 |
*.shar.gz*) \ |
| 458 |
GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\ |
| 459 |
*.zip*) \ |
| 460 |
unzip $(distdir).zip ;;\ |
| 461 |
esac |
| 462 |
chmod -R a-w $(distdir); chmod a+w $(distdir) |
| 463 |
mkdir $(distdir)/_build |
| 464 |
mkdir $(distdir)/_inst |
| 465 |
chmod a-w $(distdir) |
| 466 |
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \ |
| 467 |
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \ |
| 468 |
&& cd $(distdir)/_build \ |
| 469 |
&& ../configure --srcdir=.. --prefix="$$dc_install_base" \ |
| 470 |
$(DISTCHECK_CONFIGURE_FLAGS) \ |
| 471 |
&& $(MAKE) $(AM_MAKEFLAGS) \ |
| 472 |
&& $(MAKE) $(AM_MAKEFLAGS) dvi \ |
| 473 |
&& $(MAKE) $(AM_MAKEFLAGS) check \ |
| 474 |
&& $(MAKE) $(AM_MAKEFLAGS) install \ |
| 475 |
&& $(MAKE) $(AM_MAKEFLAGS) installcheck \ |
| 476 |
&& $(MAKE) $(AM_MAKEFLAGS) uninstall \ |
| 477 |
&& $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \ |
| 478 |
distuninstallcheck \ |
| 479 |
&& chmod -R a-w "$$dc_install_base" \ |
| 480 |
&& ({ \ |
| 481 |
(cd ../.. && umask 077 && mkdir "$$dc_destdir") \ |
| 482 |
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \ |
| 483 |
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \ |
| 484 |
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \ |
| 485 |
distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \ |
| 486 |
} || { rm -rf "$$dc_destdir"; exit 1; }) \ |
| 487 |
&& rm -rf "$$dc_destdir" \ |
| 488 |
&& $(MAKE) $(AM_MAKEFLAGS) dist \ |
| 489 |
&& rm -rf $(DIST_ARCHIVES) \ |
| 490 |
&& $(MAKE) $(AM_MAKEFLAGS) distcleancheck |
| 491 |
$(am__remove_distdir) |
| 492 |
@(echo "$(distdir) archives ready for distribution: "; \ |
| 493 |
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \ |
| 494 |
sed -e '1{h;s/./=/g;p;x;}' -e '$${p;x;}' |
| 495 |
distuninstallcheck: |
| 496 |
@cd $(distuninstallcheck_dir) \ |
| 497 |
&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \ |
| 498 |
|| { echo "ERROR: files left after uninstall:" ; \ |
| 499 |
if test -n "$(DESTDIR)"; then \ |
| 500 |
echo " (check DESTDIR support)"; \ |
| 501 |
fi ; \ |
| 502 |
$(distuninstallcheck_listfiles) ; \ |
| 503 |
exit 1; } >&2 |
| 504 |
distcleancheck: distclean |
| 505 |
@if test '$(srcdir)' = . ; then \ |
| 506 |
echo "ERROR: distcleancheck can only run from a VPATH build" ; \ |
| 507 |
exit 1 ; \ |
| 508 |
fi |
| 509 |
@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \ |
| 510 |
|| { echo "ERROR: files left in build directory after distclean:" ; \ |
| 511 |
$(distcleancheck_listfiles) ; \ |
| 512 |
exit 1; } >&2 |
| 513 |
check-am: all-am |
| 514 |
check: check-recursive |
| 515 |
all-am: Makefile |
| 516 |
installdirs: installdirs-recursive |
| 517 |
installdirs-am: |
| 518 |
install-exec: install-exec-recursive |
| 519 |
install-data: install-data-recursive |
| 520 |
uninstall: uninstall-recursive |
| 521 |
|
| 522 |
install-am: all-am |
| 523 |
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am |
| 524 |
|
| 525 |
installcheck: installcheck-recursive |
| 526 |
install-strip: |
| 527 |
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ |
| 528 |
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ |
| 529 |
`test -z '$(STRIP)' || \ |
| 530 |
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install |
| 531 |
mostlyclean-generic: |
| 532 |
|
| 533 |
clean-generic: |
| 534 |
|
| 535 |
distclean-generic: |
| 536 |
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) |
| 537 |
|
| 538 |
maintainer-clean-generic: |
| 539 |
@echo "This command is intended for maintainers to use" |
| 540 |
@echo "it deletes files that may require special tools to rebuild." |
| 541 |
clean: clean-recursive |
| 542 |
|
| 543 |
clean-am: clean-generic clean-local mostlyclean-am |
| 544 |
|
| 545 |
distclean: distclean-recursive |
| 546 |
-rm -f $(am__CONFIG_DISTCLEAN_FILES) |
| 547 |
-rm -f Makefile |
| 548 |
distclean-am: clean-am distclean-generic distclean-local \ |
| 549 |
distclean-tags |
| 550 |
|
| 551 |
dvi: dvi-recursive |
| 552 |
|
| 553 |
dvi-am: |
| 554 |
|
| 555 |
html: html-recursive |
| 556 |
|
| 557 |
info: info-recursive |
| 558 |
|
| 559 |
info-am: |
| 560 |
|
| 561 |
install-data-am: |
| 562 |
|
| 563 |
install-exec-am: |
| 564 |
|
| 565 |
install-info: install-info-recursive |
| 566 |
|
| 567 |
install-man: |
| 568 |
|
| 569 |
installcheck-am: |
| 570 |
|
| 571 |
maintainer-clean: maintainer-clean-recursive |
| 572 |
-rm -f $(am__CONFIG_DISTCLEAN_FILES) |
| 573 |
-rm -rf $(top_srcdir)/autom4te.cache |
| 574 |
-rm -f Makefile |
| 575 |
maintainer-clean-am: distclean-am maintainer-clean-generic |
| 576 |
|
| 577 |
mostlyclean: mostlyclean-recursive |
| 578 |
|
| 579 |
mostlyclean-am: mostlyclean-generic |
| 580 |
|
| 581 |
pdf: pdf-recursive |
| 582 |
|
| 583 |
pdf-am: |
| 584 |
|
| 585 |
ps: ps-recursive |
| 586 |
|
| 587 |
ps-am: |
| 588 |
|
| 589 |
uninstall-am: uninstall-info-am |
| 590 |
|
| 591 |
uninstall-info: uninstall-info-recursive |
| 592 |
|
| 593 |
.PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am am--refresh check \ |
| 594 |
check-am clean clean-generic clean-local clean-recursive ctags \ |
| 595 |
ctags-recursive dist dist-all dist-bzip2 dist-gzip dist-shar \ |
| 596 |
dist-tarZ dist-zip distcheck distclean distclean-generic \ |
| 597 |
distclean-local distclean-recursive distclean-tags \ |
| 598 |
distcleancheck distdir distuninstallcheck dvi dvi-am html \ |
| 599 |
html-am info info-am install install-am install-data \ |
| 600 |
install-data-am install-exec install-exec-am install-info \ |
| 601 |
install-info-am install-man install-strip installcheck \ |
| 602 |
installcheck-am installdirs installdirs-am maintainer-clean \ |
| 603 |
maintainer-clean-generic maintainer-clean-recursive \ |
| 604 |
mostlyclean mostlyclean-generic mostlyclean-recursive pdf \ |
| 605 |
pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \ |
| 606 |
uninstall-info-am |
| 607 |
|
| 608 |
|
| 609 |
distclean-local: clean-local |
| 610 |
clean-local: clean-ac |
| 611 |
clean-ac: |
| 612 |
-rm -rf autom4te.cache |
| 613 |
distclean2: |
| 614 |
-rm -rf src/server.py index.html html/server.html pdb2pqr.cgi tmp/ pdb2pka/*.o pdb2pka/*.so pdb2pka/substruct/*.so pdb2pka/substruct/*.o junk *~ tests/test/test-output-user* tests/test/test.sh tests/adv-test/test-output-user* tests/adv-test/test.sh |
| 615 |
|
| 616 |
test: |
| 617 |
tests/test/test.sh |
| 618 |
|
| 619 |
adv-test: |
| 620 |
tests/adv-test/test.sh |
| 621 |
|
| 622 |
install: |
| 623 |
make |
| 624 |
@if test "$(PREFIX)" == "$(CWD)/" ; then \ |
| 625 |
echo Your current source directory is the install directory. Nothing to be done. ; \ |
| 626 |
else \ |
| 627 |
c=`pwd`; \ |
| 628 |
echo $(PREFIX) > prefixfile ; \ |
| 629 |
awk -F"/" '{print NF-1}' ${dirpath} > fieldfile ; \ |
| 630 |
fields=`cat fieldfile`; \ |
| 631 |
awk -F"/" '{print $$NF}' ${dirpath} > lastfieldfile ; \ |
| 632 |
lastfield=`cat lastfieldfile`; \ |
| 633 |
if test -z $$lastfield; then \ |
| 634 |
fields=`expr $$fields - 1` ; \ |
| 635 |
fi ; \ |
| 636 |
dirpath=`pwd`; \ |
| 637 |
cd / ; \ |
| 638 |
awk -F"/" '{print $$2}' $$dirpath/prefixfile > $$dirpath/dir1file ; \ |
| 639 |
dir1=`cat $$dirpath/dir1file` ; \ |
| 640 |
if test -d $$dir1; then \ |
| 641 |
cd $$dir1 ; \ |
| 642 |
else \ |
| 643 |
if test -w .; then \ |
| 644 |
mkdir $$dir1 ; \ |
| 645 |
cd $$dir1 ; \ |
| 646 |
else \ |
| 647 |
echo You do not have permission to write in $$dir1. Ask your system administrator to make a symbolic link. Make sure the symbolic link has the same directory name as your PDB2PQR directory. ; \ |
| 648 |
exit 1 ;\ |
| 649 |
fi ; \ |
| 650 |
fi ; \ |
| 651 |
if test $$fields -eq 1 ; then \ |
| 652 |
dir=$$dir1 ; \ |
| 653 |
fi ; \ |
| 654 |
for (( i = 3 ; i <= $$fields+1; i++ )) ; \ |
| 655 |
do \ |
| 656 |
dir=`cat $$dirpath/prefixfile | cut -f$$i -d"/"` ; \ |
| 657 |
if test -d $$dir; then \ |
| 658 |
cd $$dir ;\ |
| 659 |
else \ |
| 660 |
if test -w .; then \ |
| 661 |
mkdir $$dir ; \ |
| 662 |
cd $$dir ; \ |
| 663 |
else \ |
| 664 |
echo You do not have permission to write in $$dir. Ask your system administrator to make a symoblic link. Make sure the symbolic link has the same directory name as your PDB2PQR directory ;\ |
| 665 |
exit 2 ; \ |
| 666 |
fi ; \ |
| 667 |
fi ; \ |
| 668 |
done ; \ |
| 669 |
cd .. ; \ |
| 670 |
chmod 755 $(CWD)/$$dir ; \ |
| 671 |
if ! test -d $(CWD)/$$dir/tmp ; then \ |
| 672 |
echo "Creating tmp/" ; \ |
| 673 |
mkdir $(CWD)/$$dir/tmp ; \ |
| 674 |
fi ; \ |
| 675 |
chmod 777 $(CWD)/$$dir/tmp ; \ |
| 676 |
echo "Adding server.html" ; \ |
| 677 |
cp $$c/html/server.html $(CWD)/$$dir/index.html ; \ |
| 678 |
echo "Adding python files" ; \ |
| 679 |
cp $$c/*.py* $(CWD)/$$dir/. ; \ |
| 680 |
echo "Adding __init__.py" ; \ |
| 681 |
cp $$c/__init__.py $(CWD)/$$dir/__init__.py ; \ |
| 682 |
echo "Adding pdb2pqr.py" ; \ |
| 683 |
cp $$c/pdb2pqr.py $(CWD)/$$dir/. ; \ |
| 684 |
echo "Adding pdb2pqr.cgi" ; \ |
| 685 |
cp $$c/pdb2pqr.cgi $(CWD)/$$dir/. ; \ |
| 686 |
echo "Adding pdb2pqr.css" ; \ |
| 687 |
cp $$c/pdb2pqr-opal.cgi $(CWD)/$$dir/. ; \ |
| 688 |
echo "Adding pdb2pqr-opal.cgi" ; \ |
| 689 |
cp $$c/querystatus.cgi $(CWD)/$$dir/. ; \ |
| 690 |
echo "Adding querystatus.cgi" ; \ |
| 691 |
cp $$c/pdb2pqr.css $(CWD)/$$dir/. ; \ |
| 692 |
if ! test -d $(CWD)/$$dir/dat ; then \ |
| 693 |
mkdir $(CWD)/$$dir/dat ; \ |
| 694 |
fi ; \ |
| 695 |
echo "Adding dat/" ; \ |
| 696 |
cp $$c/dat/*.xml $(CWD)/$$dir/dat/. ; \ |
| 697 |
cp $$c/dat/*.DAT $(CWD)/$$dir/dat/. ; \ |
| 698 |
cp $$c/dat/*.names $(CWD)/$$dir/dat/. ; \ |
| 699 |
if ! test -d $(CWD)/$$dir/doc ; then \ |
| 700 |
mkdir $(CWD)/$$dir/doc ; \ |
| 701 |
fi ; \ |
| 702 |
echo "Adding doc/" ; \ |
| 703 |
cp $$c/doc/*.html $(CWD)/$$dir/doc/. ; \ |
| 704 |
cp $$c/doc/*.sh $(CWD)/$$dir/doc/. ; \ |
| 705 |
if ! test -d $(CWD)/$$dir/doc/images ; then \ |
| 706 |
mkdir $(CWD)/$$dir/doc/images ; \ |
| 707 |
fi ; \ |
| 708 |
cp $$c/doc/images/*.png $(CWD)/$$dir/doc/images/. ; \ |
| 709 |
if ! test -d $(CWD)/$$dir/doc/pydoc ; then \ |
| 710 |
mkdir $(CWD)/$$dir/doc/pydoc ; \ |
| 711 |
fi ; \ |
| 712 |
cp $$c/doc/pydoc/*.html $(CWD)/$$dir/doc/pydoc/. ; \ |
| 713 |
if ! test -d $(CWD)/$$dir/examples ; then \ |
| 714 |
mkdir $(CWD)/$$dir/examples ; \ |
| 715 |
fi ; \ |
| 716 |
echo "Adding examples/" ; \ |
| 717 |
cp $$c/examples/*.html $(CWD)/$$dir/examples/. ; \ |
| 718 |
if ! test -d $(CWD)/$$dir/examples/1a1p ; then \ |
| 719 |
mkdir $(CWD)/$$dir/examples/1a1p ; \ |
| 720 |
fi ; \ |
| 721 |
cp $$c/examples/1a1p/*.pdb $(CWD)/$$dir/examples/1a1p/. ; \ |
| 722 |
cp $$c/examples/1a1p/README $(CWD)/$$dir/examples/1a1p/. ; \ |
| 723 |
if ! test -d $(CWD)/$$dir/examples/ligands ; then \ |
| 724 |
mkdir $(CWD)/$$dir/examples/ligands ; \ |
| 725 |
fi ; \ |
| 726 |
cp $$c/examples/ligands/*.mol* $(CWD)/$$dir/examples/ligands/. ; \ |
| 727 |
if ! test -d $(CWD)/$$dir/extensions ; then \ |
| 728 |
mkdir $(CWD)/$$dir/extensions ; \ |
| 729 |
fi ; \ |
| 730 |
echo "Adding extensions" ; \ |
| 731 |
cp $$c/extensions/*.py $(CWD)/$$dir/extensions/. ; \ |
| 732 |
if ! test -d $(CWD)/$$dir/html ; then \ |
| 733 |
mkdir $(CWD)/$$dir/html ; \ |
| 734 |
fi ; \ |
| 735 |
cp $$c/html/index.php $(CWD)/$$dir/html/. ; \ |
| 736 |
cp $$c/html/master-index.html $(CWD)/$$dir/html/. ; \ |
| 737 |
cp $$c/html/server.html $(CWD)/$$dir/html/server.html ; \ |
| 738 |
if ! test -d $(CWD)/$$dir/src ; then \ |
| 739 |
mkdir $(CWD)/$$dir/src ; \ |
| 740 |
fi ; \ |
| 741 |
echo "Adding python files from src/" ; \ |
| 742 |
cp $$c/src/*.py* $(CWD)/$$dir/src/. ; \ |
| 743 |
cp $$c/src/server.py $(CWD)/$$dir/src/server.py ; \ |
| 744 |
if test "$(PROPKA)" == "enable" ; then \ |
| 745 |
if ! test -d $(CWD)/$$dir/propka ; then \ |
| 746 |
mkdir $(CWD)/$$dir/propka ; \ |
| 747 |
fi ; \ |
| 748 |
echo "Adding propka"; \ |
| 749 |
cp $$c/propka/propka $(CWD)/$$dir/propka/. ; \ |
| 750 |
cp $$c/propka/propkalib.i $(CWD)/$$dir/propka/. ; \ |
| 751 |
cp $$c/propka/*.py $(CWD)/$$dir/propka/. ; \ |
| 752 |
cp $$c/propka/*.so $(CWD)/$$dir/propka/. ; \ |
| 753 |
fi ; \ |
| 754 |
if test "$(PDB2PKA)" == "enable" ; then \ |
| 755 |
if ! test -d $(CWD)/$$dir/pdb2pka ; then \ |
| 756 |
mkdir $(CWD)/$$dir/pdb2pka ; \ |
| 757 |
fi ; \ |
| 758 |
echo "Adding pdb2pka" ; \ |
| 759 |
cp $$c/pdb2pka/*.so $(CWD)/$$dir/pdb2pka/. ; \ |
| 760 |
cp $$c/pdb2pka/*.py $(CWD)/$$dir/pdb2pka/. ; \ |
| 761 |
cp $$c/pdb2pka/*.DAT $(CWD)/$$dir/pdb2pka/. ; \ |
| 762 |
cp $$c/pdb2pka/*.h $(CWD)/$$dir/pdb2pka/. ; \ |
| 763 |
cp $$c/pdb2pka/*.i $(CWD)/$$dir/pdb2pka/. ; \ |
| 764 |
if ! test -d $(CWD)/$$dir/pdb2pka/ligandclean ; then \ |
| 765 |
mkdir $(CWD)/$$dir/pdb2pka/ligandclean ; \ |
| 766 |
fi ; \ |
| 767 |
cp -rf $$c/pdb2pka/ligandclean/*.py $(CWD)/$$dir/pdb2pka/ligandclean/. ; \ |
| 768 |
if ! test -d $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes ; then \ |
| 769 |
mkdir $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes ; \ |
| 770 |
fi ; \ |
| 771 |
cp -rf $$c/pdb2pka/ligandclean/testcomplexes/*.pdb $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes/. ; \ |
| 772 |
cp -rf $$c/pdb2pka/ligandclean/testcomplexes/*.mol* $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes/. ; \ |
| 773 |
if ! test -d $(CWD)/$$dir/pdb2pka/substruct ; then \ |
| 774 |
mkdir $(CWD)/$$dir/pdb2pka/substruct ; \ |
| 775 |
fi ; \ |
| 776 |
cp $$c/pdb2pka/substruct/*.py $(CWD)/$$dir/pdb2pka/substruct/. ; \ |
| 777 |
cp $$c/pdb2pka/substruct/*.so $(CWD)/$$dir/pdb2pka/substruct/. ; \ |
| 778 |
if ! test -d $(CWD)/$$dir/pdb2pka/substruct/clique ; then \ |
| 779 |
mkdir $(CWD)/$$dir/pdb2pka/substruct/clique ; \ |
| 780 |
fi ; \ |
| 781 |
cp $$c/pdb2pka/substruct/clique/*.h $(CWD)/$$dir/pdb2pka/substruct/clique/. ; \ |
| 782 |
fi ; \ |
| 783 |
echo PDB2PQR has been installed in $(CWD)/$$dir ; \ |
| 784 |
echo ; \ |
| 785 |
cd $(CWD)/$$dir ; \ |
| 786 |
cd $$c; \ |
| 787 |
rm lastfieldfile prefixfile dir1file fieldfile ; \ |
| 788 |
echo $(URL) > url_file ; \ |
| 789 |
awk -F"/" '{print $$(NF-1)}' url_file > url_file_2 ; \ |
| 790 |
last_url=`cat url_file_2` ; \ |
| 791 |
echo $(PREFIX) > p_file ; \ |
| 792 |
awk -F"/" '{print $$(NF-1)}' p_file > p_file_2 ; \ |
| 793 |
last_p=`cat p_file_2` ; \ |
| 794 |
rm -f url_file* p_file* ; \ |
| 795 |
if test `whoami` = "root" ; then \ |
| 796 |
webviewable="true" ; \ |
| 797 |
echo ${prefix} > prefix_file_tmp ; \ |
| 798 |
first=`awk -F"/" '{ print $$2 }' prefix_file_tmp` ; \ |
| 799 |
second=`awk -F"/" '{ print $$3 }' prefix_file_tmp` ; \ |
| 800 |
third=`awk -F"/" '{ print $$4 }' prefix_file_tmp` ; \ |
| 801 |
rm -f prefix_file_tmp ; \ |
| 802 |
if test $$first != var || test $$second != www || test $$third != html ; then \ |
| 803 |
webviewable=false ; \ |
| 804 |
fi ; \ |
| 805 |
if test "$$last_url" != "$$last_p" || test "$$webviewable" = "false" ; then \ |
| 806 |
echo Need to make symbolic link between $(PREFIX) and /var/www/html/"$$last_url" ; \ |
| 807 |
if test -d "/var/www/html/$$last_url" ; then \ |
| 808 |
echo "***" Warning! Directory /var/www/html/"$$last_url" already exists. ; \ |
| 809 |
echo Do you want to overwrite this? \(Y/N\); \ |
| 810 |
read choice ; \ |
| 811 |
while (test $$choice != "Y" && test $$choice != "y" && test $$choice != "N" && test $$choice != "n") \ |
| 812 |
do \ |
| 813 |
echo You have entered $$choice. Please enter Y or N: ; \ |
| 814 |
read choice ; \ |
| 815 |
done ; \ |
| 816 |
if test $$choice = "N" || test $$choice = "n" ; then \ |
| 817 |
echo Please run configure again and specify a different --prefix ; \ |
| 818 |
exit 0 ; \ |
| 819 |
fi ; \ |
| 820 |
rm -rf /var/www/html/"$$last_url" ; \ |
| 821 |
fi ; \ |
| 822 |
ln -s $(PREFIX) /var/www/html/"$$last_url" ; \ |
| 823 |
echo "Symbolic link created." ; \ |
| 824 |
fi ; \ |
| 825 |
else \ |
| 826 |
echo Ask your system administrator to make a symbolic link in /var/www/html by executing the following command; \ |
| 827 |
echo ln -s $(PREFIX) /var/www/html/"$$last_url" ; \ |
| 828 |
fi ; \ |
| 829 |
fi |
| 830 |
# Tell versions [3.59,3.63) of GNU make to not export all variables. |
| 831 |
# Otherwise a system limit (for SysV at least) may be exceeded. |
| 832 |
.NOEXPORT: |
