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root/freemol/trunk/src/pdb2pqr/src/Makefile.in.mingw
Revision: 54
Committed: Mon Sep 29 23:37:10 2008 UTC (10 years, 9 months ago) by tjod
File size: 28522 byte(s)
Log Message:
changes for mingw

Line File contents
1 # Makefile.in generated by automake 1.9.6 from Makefile.am.
2 # @configure_input@
3
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
5 # 2003, 2004, 2005 Free Software Foundation, Inc.
6 # This Makefile.in is free software; the Free Software Foundation
7 # gives unlimited permission to copy and/or distribute it,
8 # with or without modifications, as long as this notice is preserved.
9
10 # This program is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
13 # PARTICULAR PURPOSE.
14
15 @SET_MAKE@
16 srcdir = @srcdir@
17 top_srcdir = @top_srcdir@
18 VPATH = @srcdir@
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22 top_builddir = .
23 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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177 target_os = @target_os@
178 target_vendor = @target_vendor@
179 website_install_var = @website_install_var@
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181 with_propka = @with_propka@
182 AUTOMAKE_OPTIONS = no-dependencies
183 SUFFIXES = .H .h .C .cc .c .f .o
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188 PDB2PKA = @with_pdb2pka@
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192 html/server.html.in src/aa.py src/definitions.py src/forcefield.py src/hydrogens.py \
193 src/__init__.py src/inputgen.py src/na.py src/pdb.py src/protein.py src/psize.py \
194 src/quatfit.py src/routines.py src/server.py.in src/structures.py src/utilities.py \
195 tools/* pdb2pka/*.py pdb2pka/*.h pdb2pka/*.i pdb2pka/*.cpp pdb2pka/*.DAT \
196 pdb2pka/substruct/*.py pdb2pka/substruct/clique/* pdb2pka/ligandclean \
197 extensions/README extensions/template extensions/*.py propka/*.py propka/*.i \
198 tests/* pdb2pka/Makefile.in pdb2pka/Makefile.am
199
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202 .SUFFIXES:
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213 exit 1;; \
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216 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Makefile'; \
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220 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
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239 # This directory's subdirectories are mostly independent; you can cd
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241 # To change the values of `make' variables: instead of editing Makefiles,
242 # (1) if the variable is set in `config.status', edit `config.status'
243 # (which will cause the Makefiles to be regenerated when you run `make');
244 # (2) otherwise, pass the desired values on the `make' command line.
245 $(RECURSIVE_TARGETS):
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247 for f in x $$MAKEFLAGS; do \
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310 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
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551 dvi: dvi-recursive
552
553 dvi-am:
554
555 html: html-recursive
556
557 info: info-recursive
558
559 info-am:
560
561 install-data-am:
562
563 install-exec-am:
564
565 install-info: install-info-recursive
566
567 install-man:
568
569 installcheck-am:
570
571 maintainer-clean: maintainer-clean-recursive
572 -rm -f $(am__CONFIG_DISTCLEAN_FILES)
573 -rm -rf $(top_srcdir)/autom4te.cache
574 -rm -f Makefile
575 maintainer-clean-am: distclean-am maintainer-clean-generic
576
577 mostlyclean: mostlyclean-recursive
578
579 mostlyclean-am: mostlyclean-generic
580
581 pdf: pdf-recursive
582
583 pdf-am:
584
585 ps: ps-recursive
586
587 ps-am:
588
589 uninstall-am: uninstall-info-am
590
591 uninstall-info: uninstall-info-recursive
592
593 .PHONY: $(RECURSIVE_TARGETS) CTAGS GTAGS all all-am am--refresh check \
594 check-am clean clean-generic clean-local clean-recursive ctags \
595 ctags-recursive dist dist-all dist-bzip2 dist-gzip dist-shar \
596 dist-tarZ dist-zip distcheck distclean distclean-generic \
597 distclean-local distclean-recursive distclean-tags \
598 distcleancheck distdir distuninstallcheck dvi dvi-am html \
599 html-am info info-am install install-am install-data \
600 install-data-am install-exec install-exec-am install-info \
601 install-info-am install-man install-strip installcheck \
602 installcheck-am installdirs installdirs-am maintainer-clean \
603 maintainer-clean-generic maintainer-clean-recursive \
604 mostlyclean mostlyclean-generic mostlyclean-recursive pdf \
605 pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \
606 uninstall-info-am
607
608
609 distclean-local: clean-local
610 clean-local: clean-ac
611 clean-ac:
612 -rm -rf autom4te.cache
613 distclean2:
614 -rm -rf src/server.py index.html html/server.html pdb2pqr.cgi tmp/ pdb2pka/*.o pdb2pka/*.so pdb2pka/substruct/*.so pdb2pka/substruct/*.o junk *~ tests/test/test-output-user* tests/test/test.sh tests/adv-test/test-output-user* tests/adv-test/test.sh
615
616 test:
617 tests/test/test.sh
618
619 adv-test:
620 tests/adv-test/test.sh
621
622 install:
623 make
624 @if test "$(PREFIX)" == "$(CWD)/" ; then \
625 echo Your current source directory is the install directory. Nothing to be done. ; \
626 else \
627 c=`pwd`; \
628 echo $(PREFIX) > prefixfile ; \
629 awk -F"/" '{print NF-1}' ${dirpath} > fieldfile ; \
630 fields=`cat fieldfile`; \
631 awk -F"/" '{print $$NF}' ${dirpath} > lastfieldfile ; \
632 lastfield=`cat lastfieldfile`; \
633 if test -z $$lastfield; then \
634 fields=`expr $$fields - 1` ; \
635 fi ; \
636 dirpath=`pwd`; \
637 cd / ; \
638 awk -F"/" '{print $$2}' $$dirpath/prefixfile > $$dirpath/dir1file ; \
639 dir1=`cat $$dirpath/dir1file` ; \
640 if test -d $$dir1; then \
641 cd $$dir1 ; \
642 else \
643 if test -w .; then \
644 mkdir $$dir1 ; \
645 cd $$dir1 ; \
646 else \
647 echo You do not have permission to write in $$dir1. Ask your system administrator to make a symbolic link. Make sure the symbolic link has the same directory name as your PDB2PQR directory. ; \
648 exit 1 ;\
649 fi ; \
650 fi ; \
651 if test $$fields -eq 1 ; then \
652 dir=$$dir1 ; \
653 fi ; \
654 for (( i = 3 ; i <= $$fields+1; i++ )) ; \
655 do \
656 dir=`cat $$dirpath/prefixfile | cut -f$$i -d"/"` ; \
657 if test -d $$dir; then \
658 cd $$dir ;\
659 else \
660 if test -w .; then \
661 mkdir $$dir ; \
662 cd $$dir ; \
663 else \
664 echo You do not have permission to write in $$dir. Ask your system administrator to make a symoblic link. Make sure the symbolic link has the same directory name as your PDB2PQR directory ;\
665 exit 2 ; \
666 fi ; \
667 fi ; \
668 done ; \
669 cd .. ; \
670 chmod 755 $(CWD)/$$dir ; \
671 if ! test -d $(CWD)/$$dir/tmp ; then \
672 echo "Creating tmp/" ; \
673 mkdir $(CWD)/$$dir/tmp ; \
674 fi ; \
675 chmod 777 $(CWD)/$$dir/tmp ; \
676 echo "Adding server.html" ; \
677 cp $$c/html/server.html $(CWD)/$$dir/index.html ; \
678 echo "Adding python files" ; \
679 cp $$c/*.py* $(CWD)/$$dir/. ; \
680 echo "Adding __init__.py" ; \
681 cp $$c/__init__.py $(CWD)/$$dir/__init__.py ; \
682 echo "Adding pdb2pqr.py" ; \
683 cp $$c/pdb2pqr.py $(CWD)/$$dir/. ; \
684 echo "Adding pdb2pqr.cgi" ; \
685 cp $$c/pdb2pqr.cgi $(CWD)/$$dir/. ; \
686 echo "Adding pdb2pqr.css" ; \
687 cp $$c/pdb2pqr-opal.cgi $(CWD)/$$dir/. ; \
688 echo "Adding pdb2pqr-opal.cgi" ; \
689 cp $$c/querystatus.cgi $(CWD)/$$dir/. ; \
690 echo "Adding querystatus.cgi" ; \
691 cp $$c/pdb2pqr.css $(CWD)/$$dir/. ; \
692 if ! test -d $(CWD)/$$dir/dat ; then \
693 mkdir $(CWD)/$$dir/dat ; \
694 fi ; \
695 echo "Adding dat/" ; \
696 cp $$c/dat/*.xml $(CWD)/$$dir/dat/. ; \
697 cp $$c/dat/*.DAT $(CWD)/$$dir/dat/. ; \
698 cp $$c/dat/*.names $(CWD)/$$dir/dat/. ; \
699 if ! test -d $(CWD)/$$dir/doc ; then \
700 mkdir $(CWD)/$$dir/doc ; \
701 fi ; \
702 echo "Adding doc/" ; \
703 cp $$c/doc/*.html $(CWD)/$$dir/doc/. ; \
704 cp $$c/doc/*.sh $(CWD)/$$dir/doc/. ; \
705 if ! test -d $(CWD)/$$dir/doc/images ; then \
706 mkdir $(CWD)/$$dir/doc/images ; \
707 fi ; \
708 cp $$c/doc/images/*.png $(CWD)/$$dir/doc/images/. ; \
709 if ! test -d $(CWD)/$$dir/doc/pydoc ; then \
710 mkdir $(CWD)/$$dir/doc/pydoc ; \
711 fi ; \
712 cp $$c/doc/pydoc/*.html $(CWD)/$$dir/doc/pydoc/. ; \
713 if ! test -d $(CWD)/$$dir/examples ; then \
714 mkdir $(CWD)/$$dir/examples ; \
715 fi ; \
716 echo "Adding examples/" ; \
717 cp $$c/examples/*.html $(CWD)/$$dir/examples/. ; \
718 if ! test -d $(CWD)/$$dir/examples/1a1p ; then \
719 mkdir $(CWD)/$$dir/examples/1a1p ; \
720 fi ; \
721 cp $$c/examples/1a1p/*.pdb $(CWD)/$$dir/examples/1a1p/. ; \
722 cp $$c/examples/1a1p/README $(CWD)/$$dir/examples/1a1p/. ; \
723 if ! test -d $(CWD)/$$dir/examples/ligands ; then \
724 mkdir $(CWD)/$$dir/examples/ligands ; \
725 fi ; \
726 cp $$c/examples/ligands/*.mol* $(CWD)/$$dir/examples/ligands/. ; \
727 if ! test -d $(CWD)/$$dir/extensions ; then \
728 mkdir $(CWD)/$$dir/extensions ; \
729 fi ; \
730 echo "Adding extensions" ; \
731 cp $$c/extensions/*.py $(CWD)/$$dir/extensions/. ; \
732 if ! test -d $(CWD)/$$dir/html ; then \
733 mkdir $(CWD)/$$dir/html ; \
734 fi ; \
735 cp $$c/html/index.php $(CWD)/$$dir/html/. ; \
736 cp $$c/html/master-index.html $(CWD)/$$dir/html/. ; \
737 cp $$c/html/server.html $(CWD)/$$dir/html/server.html ; \
738 if ! test -d $(CWD)/$$dir/src ; then \
739 mkdir $(CWD)/$$dir/src ; \
740 fi ; \
741 echo "Adding python files from src/" ; \
742 cp $$c/src/*.py* $(CWD)/$$dir/src/. ; \
743 cp $$c/src/server.py $(CWD)/$$dir/src/server.py ; \
744 if test "$(PROPKA)" == "enable" ; then \
745 if ! test -d $(CWD)/$$dir/propka ; then \
746 mkdir $(CWD)/$$dir/propka ; \
747 fi ; \
748 echo "Adding propka"; \
749 cp $$c/propka/propka $(CWD)/$$dir/propka/. ; \
750 cp $$c/propka/propkalib.i $(CWD)/$$dir/propka/. ; \
751 cp $$c/propka/*.py $(CWD)/$$dir/propka/. ; \
752 cp $$c/propka/*.so $(CWD)/$$dir/propka/. ; \
753 fi ; \
754 if test "$(PDB2PKA)" == "enable" ; then \
755 if ! test -d $(CWD)/$$dir/pdb2pka ; then \
756 mkdir $(CWD)/$$dir/pdb2pka ; \
757 fi ; \
758 echo "Adding pdb2pka" ; \
759 cp $$c/pdb2pka/*.so $(CWD)/$$dir/pdb2pka/. ; \
760 cp $$c/pdb2pka/*.py $(CWD)/$$dir/pdb2pka/. ; \
761 cp $$c/pdb2pka/*.DAT $(CWD)/$$dir/pdb2pka/. ; \
762 cp $$c/pdb2pka/*.h $(CWD)/$$dir/pdb2pka/. ; \
763 cp $$c/pdb2pka/*.i $(CWD)/$$dir/pdb2pka/. ; \
764 if ! test -d $(CWD)/$$dir/pdb2pka/ligandclean ; then \
765 mkdir $(CWD)/$$dir/pdb2pka/ligandclean ; \
766 fi ; \
767 cp -rf $$c/pdb2pka/ligandclean/*.py $(CWD)/$$dir/pdb2pka/ligandclean/. ; \
768 if ! test -d $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes ; then \
769 mkdir $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes ; \
770 fi ; \
771 cp -rf $$c/pdb2pka/ligandclean/testcomplexes/*.pdb $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes/. ; \
772 cp -rf $$c/pdb2pka/ligandclean/testcomplexes/*.mol* $(CWD)/$$dir/pdb2pka/ligandclean/testcomplexes/. ; \
773 if ! test -d $(CWD)/$$dir/pdb2pka/substruct ; then \
774 mkdir $(CWD)/$$dir/pdb2pka/substruct ; \
775 fi ; \
776 cp $$c/pdb2pka/substruct/*.py $(CWD)/$$dir/pdb2pka/substruct/. ; \
777 cp $$c/pdb2pka/substruct/*.so $(CWD)/$$dir/pdb2pka/substruct/. ; \
778 if ! test -d $(CWD)/$$dir/pdb2pka/substruct/clique ; then \
779 mkdir $(CWD)/$$dir/pdb2pka/substruct/clique ; \
780 fi ; \
781 cp $$c/pdb2pka/substruct/clique/*.h $(CWD)/$$dir/pdb2pka/substruct/clique/. ; \
782 fi ; \
783 echo PDB2PQR has been installed in $(CWD)/$$dir ; \
784 echo ; \
785 cd $(CWD)/$$dir ; \
786 cd $$c; \
787 rm lastfieldfile prefixfile dir1file fieldfile ; \
788 echo $(URL) > url_file ; \
789 awk -F"/" '{print $$(NF-1)}' url_file > url_file_2 ; \
790 last_url=`cat url_file_2` ; \
791 echo $(PREFIX) > p_file ; \
792 awk -F"/" '{print $$(NF-1)}' p_file > p_file_2 ; \
793 last_p=`cat p_file_2` ; \
794 rm -f url_file* p_file* ; \
795 if test `whoami` = "root" ; then \
796 webviewable="true" ; \
797 echo ${prefix} > prefix_file_tmp ; \
798 first=`awk -F"/" '{ print $$2 }' prefix_file_tmp` ; \
799 second=`awk -F"/" '{ print $$3 }' prefix_file_tmp` ; \
800 third=`awk -F"/" '{ print $$4 }' prefix_file_tmp` ; \
801 rm -f prefix_file_tmp ; \
802 if test $$first != var || test $$second != www || test $$third != html ; then \
803 webviewable=false ; \
804 fi ; \
805 if test "$$last_url" != "$$last_p" || test "$$webviewable" = "false" ; then \
806 echo Need to make symbolic link between $(PREFIX) and /var/www/html/"$$last_url" ; \
807 if test -d "/var/www/html/$$last_url" ; then \
808 echo "***" Warning! Directory /var/www/html/"$$last_url" already exists. ; \
809 echo Do you want to overwrite this? \(Y/N\); \
810 read choice ; \
811 while (test $$choice != "Y" && test $$choice != "y" && test $$choice != "N" && test $$choice != "n") \
812 do \
813 echo You have entered $$choice. Please enter Y or N: ; \
814 read choice ; \
815 done ; \
816 if test $$choice = "N" || test $$choice = "n" ; then \
817 echo Please run configure again and specify a different --prefix ; \
818 exit 0 ; \
819 fi ; \
820 rm -rf /var/www/html/"$$last_url" ; \
821 fi ; \
822 ln -s $(PREFIX) /var/www/html/"$$last_url" ; \
823 echo "Symbolic link created." ; \
824 fi ; \
825 else \
826 echo Ask your system administrator to make a symbolic link in /var/www/html by executing the following command; \
827 echo ln -s $(PREFIX) /var/www/html/"$$last_url" ; \
828 fi ; \
829 fi
830 # Tell versions [3.59,3.63) of GNU make to not export all variables.
831 # Otherwise a system limit (for SysV at least) may be exceeded.
832 .NOEXPORT:

Properties

Name Value
svn:executable *