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root/freemol/trunk/src/pdb2pqr/src/configure.mingw
Revision: 54
Committed: Mon Sep 29 23:37:10 2008 UTC (10 years, 9 months ago) by tjod
File size: 153658 byte(s)
Log Message:
changes for mingw

Line File contents
1 #! /bin/sh
2 # Guess values for system-dependent variables and create Makefiles.
3 # Generated by GNU Autoconf 2.60 for PDB2PQR 1.3.0.
4 #
5 # Report bugs to <todd@ccb.wustl.edu>.
6 #
7 # Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
8 # 2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
9 # This configure script is free software; the Free Software Foundation
10 # gives unlimited permission to copy, distribute and modify it.
11 ## --------------------- ##
12 ## M4sh Initialization. ##
13 ## --------------------- ##
14
15 # Be Bourne compatible
16 if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
17 emulate sh
18 NULLCMD=:
19 # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
20 # is contrary to our usage. Disable this feature.
21 alias -g '${1+"$@"}'='"$@"'
22 setopt NO_GLOB_SUBST
23 else
24 case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
25 fi
26 BIN_SH=xpg4; export BIN_SH # for Tru64
27 DUALCASE=1; export DUALCASE # for MKS sh
28
29
30 # PATH needs CR
31 # Avoid depending upon Character Ranges.
32 as_cr_letters='abcdefghijklmnopqrstuvwxyz'
33 as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
34 as_cr_Letters=$as_cr_letters$as_cr_LETTERS
35 as_cr_digits='0123456789'
36 as_cr_alnum=$as_cr_Letters$as_cr_digits
37
38 # The user is always right.
39 if test "${PATH_SEPARATOR+set}" != set; then
40 echo "#! /bin/sh" >conf$$.sh
41 echo "exit 0" >>conf$$.sh
42 chmod +x conf$$.sh
43 if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
44 PATH_SEPARATOR=';'
45 else
46 PATH_SEPARATOR=:
47 fi
48 rm -f conf$$.sh
49 fi
50
51 # Support unset when possible.
52 if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
53 as_unset=unset
54 else
55 as_unset=false
56 fi
57
58
59 # IFS
60 # We need space, tab and new line, in precisely that order. Quoting is
61 # there to prevent editors from complaining about space-tab.
62 # (If _AS_PATH_WALK were called with IFS unset, it would disable word
63 # splitting by setting IFS to empty value.)
64 as_nl='
65 '
66 IFS=" "" $as_nl"
67
68 # Find who we are. Look in the path if we contain no directory separator.
69 case $0 in
70 *[\\/]* ) as_myself=$0 ;;
71 *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
72 for as_dir in $PATH
73 do
74 IFS=$as_save_IFS
75 test -z "$as_dir" && as_dir=.
76 test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
77 done
78 IFS=$as_save_IFS
79
80 ;;
81 esac
82 # We did not find ourselves, most probably we were run as `sh COMMAND'
83 # in which case we are not to be found in the path.
84 if test "x$as_myself" = x; then
85 as_myself=$0
86 fi
87 if test ! -f "$as_myself"; then
88 echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
89 { (exit 1); exit 1; }
90 fi
91
92 # Work around bugs in pre-3.0 UWIN ksh.
93 for as_var in ENV MAIL MAILPATH
94 do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
95 done
96 PS1='$ '
97 PS2='> '
98 PS4='+ '
99
100 # NLS nuisances.
101 for as_var in \
102 LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
103 LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
104 LC_TELEPHONE LC_TIME
105 do
106 if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
107 eval $as_var=C; export $as_var
108 else
109 ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
110 fi
111 done
112
113 # Required to use basename.
114 if expr a : '\(a\)' >/dev/null 2>&1 &&
115 test "X`expr 00001 : '.*\(...\)'`" = X001; then
116 as_expr=expr
117 else
118 as_expr=false
119 fi
120
121 if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
122 as_basename=basename
123 else
124 as_basename=false
125 fi
126
127
128 # Name of the executable.
129 as_me=`$as_basename -- "$0" ||
130 $as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
131 X"$0" : 'X\(//\)$' \| \
132 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
133 echo X/"$0" |
134 sed '/^.*\/\([^/][^/]*\)\/*$/{
135 s//\1/
136 q
137 }
138 /^X\/\(\/\/\)$/{
139 s//\1/
140 q
141 }
142 /^X\/\(\/\).*/{
143 s//\1/
144 q
145 }
146 s/.*/./; q'`
147
148 # CDPATH.
149 $as_unset CDPATH
150
151
152 if test "x$CONFIG_SHELL" = x; then
153 if (eval ":") 2>/dev/null; then
154 as_have_required=yes
155 else
156 as_have_required=no
157 fi
158
159 if test $as_have_required = yes && (eval ":
160 (as_func_return () {
161 (exit \$1)
162 }
163 as_func_success () {
164 as_func_return 0
165 }
166 as_func_failure () {
167 as_func_return 1
168 }
169 as_func_ret_success () {
170 return 0
171 }
172 as_func_ret_failure () {
173 return 1
174 }
175
176 exitcode=0
177 if as_func_success; then
178 :
179 else
180 exitcode=1
181 echo as_func_success failed.
182 fi
183
184 if as_func_failure; then
185 exitcode=1
186 echo as_func_failure succeeded.
187 fi
188
189 if as_func_ret_success; then
190 :
191 else
192 exitcode=1
193 echo as_func_ret_success failed.
194 fi
195
196 if as_func_ret_failure; then
197 exitcode=1
198 echo as_func_ret_failure succeeded.
199 fi
200
201 if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
202 :
203 else
204 exitcode=1
205 echo positional parameters were not saved.
206 fi
207
208 test \$exitcode = 0) || { (exit 1); exit 1; }
209
210 (
211 as_lineno_1=\$LINENO
212 as_lineno_2=\$LINENO
213 test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
214 test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
215 ") 2> /dev/null; then
216 :
217 else
218 as_candidate_shells=
219 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
220 for as_dir in /usr/bin/posix$PATH_SEPARATOR/bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
221 do
222 IFS=$as_save_IFS
223 test -z "$as_dir" && as_dir=.
224 case $as_dir in
225 /*)
226 for as_base in sh bash ksh sh5; do
227 as_candidate_shells="$as_candidate_shells $as_dir/$as_base"
228 done;;
229 esac
230 done
231 IFS=$as_save_IFS
232
233
234 for as_shell in $as_candidate_shells $SHELL; do
235 # Try only shells that exist, to save several forks.
236 if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
237 { ("$as_shell") 2> /dev/null <<\_ASEOF
238 # Be Bourne compatible
239 if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
240 emulate sh
241 NULLCMD=:
242 # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
243 # is contrary to our usage. Disable this feature.
244 alias -g '${1+"$@"}'='"$@"'
245 setopt NO_GLOB_SUBST
246 else
247 case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
248 fi
249 BIN_SH=xpg4; export BIN_SH # for Tru64
250 DUALCASE=1; export DUALCASE # for MKS sh
251
252 :
253 _ASEOF
254 }; then
255 CONFIG_SHELL=$as_shell
256 as_have_required=yes
257 if { "$as_shell" 2> /dev/null <<\_ASEOF
258 # Be Bourne compatible
259 if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
260 emulate sh
261 NULLCMD=:
262 # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
263 # is contrary to our usage. Disable this feature.
264 alias -g '${1+"$@"}'='"$@"'
265 setopt NO_GLOB_SUBST
266 else
267 case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
268 fi
269 BIN_SH=xpg4; export BIN_SH # for Tru64
270 DUALCASE=1; export DUALCASE # for MKS sh
271
272 :
273 (as_func_return () {
274 (exit $1)
275 }
276 as_func_success () {
277 as_func_return 0
278 }
279 as_func_failure () {
280 as_func_return 1
281 }
282 as_func_ret_success () {
283 return 0
284 }
285 as_func_ret_failure () {
286 return 1
287 }
288
289 exitcode=0
290 if as_func_success; then
291 :
292 else
293 exitcode=1
294 echo as_func_success failed.
295 fi
296
297 if as_func_failure; then
298 exitcode=1
299 echo as_func_failure succeeded.
300 fi
301
302 if as_func_ret_success; then
303 :
304 else
305 exitcode=1
306 echo as_func_ret_success failed.
307 fi
308
309 if as_func_ret_failure; then
310 exitcode=1
311 echo as_func_ret_failure succeeded.
312 fi
313
314 if ( set x; as_func_ret_success y && test x = "$1" ); then
315 :
316 else
317 exitcode=1
318 echo positional parameters were not saved.
319 fi
320
321 test $exitcode = 0) || { (exit 1); exit 1; }
322
323 (
324 as_lineno_1=$LINENO
325 as_lineno_2=$LINENO
326 test "x$as_lineno_1" != "x$as_lineno_2" &&
327 test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
328
329 _ASEOF
330 }; then
331 break
332 fi
333
334 fi
335
336 done
337
338 if test "x$CONFIG_SHELL" != x; then
339 for as_var in BASH_ENV ENV
340 do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
341 done
342 export CONFIG_SHELL
343 exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
344 fi
345
346
347 if test $as_have_required = no; then
348 echo This script requires a shell more modern than all the
349 echo shells that I found on your system. Please install a
350 echo modern shell, or manually run the script under such a
351 echo shell if you do have one.
352 { (exit 1); exit 1; }
353 fi
354
355
356 fi
357
358 fi
359
360
361
362 (eval "as_func_return () {
363 (exit \$1)
364 }
365 as_func_success () {
366 as_func_return 0
367 }
368 as_func_failure () {
369 as_func_return 1
370 }
371 as_func_ret_success () {
372 return 0
373 }
374 as_func_ret_failure () {
375 return 1
376 }
377
378 exitcode=0
379 if as_func_success; then
380 :
381 else
382 exitcode=1
383 echo as_func_success failed.
384 fi
385
386 if as_func_failure; then
387 exitcode=1
388 echo as_func_failure succeeded.
389 fi
390
391 if as_func_ret_success; then
392 :
393 else
394 exitcode=1
395 echo as_func_ret_success failed.
396 fi
397
398 if as_func_ret_failure; then
399 exitcode=1
400 echo as_func_ret_failure succeeded.
401 fi
402
403 if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
404 :
405 else
406 exitcode=1
407 echo positional parameters were not saved.
408 fi
409
410 test \$exitcode = 0") || {
411 echo No shell found that supports shell functions.
412 echo Please tell autoconf@gnu.org about your system,
413 echo including any error possibly output before this
414 echo message
415 }
416
417
418
419 as_lineno_1=$LINENO
420 as_lineno_2=$LINENO
421 test "x$as_lineno_1" != "x$as_lineno_2" &&
422 test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
423
424 # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
425 # uniformly replaced by the line number. The first 'sed' inserts a
426 # line-number line after each line using $LINENO; the second 'sed'
427 # does the real work. The second script uses 'N' to pair each
428 # line-number line with the line containing $LINENO, and appends
429 # trailing '-' during substitution so that $LINENO is not a special
430 # case at line end.
431 # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
432 # scripts with optimization help from Paolo Bonzini. Blame Lee
433 # E. McMahon (1931-1989) for sed's syntax. :-)
434 sed -n '
435 p
436 /[$]LINENO/=
437 ' <$as_myself |
438 sed '
439 s/[$]LINENO.*/&-/
440 t lineno
441 b
442 :lineno
443 N
444 :loop
445 s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
446 t loop
447 s/-\n.*//
448 ' >$as_me.lineno &&
449 chmod +x "$as_me.lineno" ||
450 { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
451 { (exit 1); exit 1; }; }
452
453 # Don't try to exec as it changes $[0], causing all sort of problems
454 # (the dirname of $[0] is not the place where we might find the
455 # original and so on. Autoconf is especially sensitive to this).
456 . "./$as_me.lineno"
457 # Exit status is that of the last command.
458 exit
459 }
460
461
462 if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
463 as_dirname=dirname
464 else
465 as_dirname=false
466 fi
467
468 ECHO_C= ECHO_N= ECHO_T=
469 case `echo -n x` in
470 -n*)
471 case `echo 'x\c'` in
472 *c*) ECHO_T=' ';; # ECHO_T is single tab character.
473 *) ECHO_C='\c';;
474 esac;;
475 *)
476 ECHO_N='-n';;
477 esac
478
479 if expr a : '\(a\)' >/dev/null 2>&1 &&
480 test "X`expr 00001 : '.*\(...\)'`" = X001; then
481 as_expr=expr
482 else
483 as_expr=false
484 fi
485
486 rm -f conf$$ conf$$.exe conf$$.file
487 if test -d conf$$.dir; then
488 rm -f conf$$.dir/conf$$.file
489 else
490 rm -f conf$$.dir
491 mkdir conf$$.dir
492 fi
493 echo >conf$$.file
494 if ln -s conf$$.file conf$$ 2>/dev/null; then
495 as_ln_s='ln -s'
496 # ... but there are two gotchas:
497 # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
498 # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
499 # In both cases, we have to default to `cp -p'.
500 ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
501 as_ln_s='cp -p'
502 elif ln conf$$.file conf$$ 2>/dev/null; then
503 as_ln_s=ln
504 else
505 as_ln_s='cp -p'
506 fi
507 rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
508 rmdir conf$$.dir 2>/dev/null
509
510 if mkdir -p . 2>/dev/null; then
511 as_mkdir_p=:
512 else
513 test -d ./-p && rmdir ./-p
514 as_mkdir_p=false
515 fi
516
517 # Find out whether ``test -x'' works. Don't use a zero-byte file, as
518 # systems may use methods other than mode bits to determine executability.
519 cat >conf$$.file <<_ASEOF
520 #! /bin/sh
521 exit 0
522 _ASEOF
523 chmod +x conf$$.file
524 if test -x conf$$.file >/dev/null 2>&1; then
525 as_executable_p="test -x"
526 else
527 as_executable_p=:
528 fi
529 rm -f conf$$.file
530
531 # Sed expression to map a string onto a valid CPP name.
532 as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
533
534 # Sed expression to map a string onto a valid variable name.
535 as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
536
537
538
539 exec 7<&0 </dev/null 6>&1
540
541 # Name of the host.
542 # hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
543 # so uname gets run too.
544 ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
545
546 #
547 # Initializations.
548 #
549 ac_default_prefix=/usr/local
550 ac_clean_files=
551 ac_config_libobj_dir=.
552 LIBOBJS=
553 cross_compiling=no
554 subdirs=
555 MFLAGS=
556 MAKEFLAGS=
557 SHELL=${CONFIG_SHELL-/bin/sh}
558
559 # Identity of this package.
560 PACKAGE_NAME='PDB2PQR'
561 PACKAGE_TARNAME='pdb2pqr'
562 PACKAGE_VERSION='1.3.0'
563 PACKAGE_STRING='PDB2PQR 1.3.0'
564 PACKAGE_BUGREPORT='todd@ccb.wustl.edu'
565
566 ac_subst_vars='SHELL
567 PATH_SEPARATOR
568 PACKAGE_NAME
569 PACKAGE_TARNAME
570 PACKAGE_VERSION
571 PACKAGE_STRING
572 PACKAGE_BUGREPORT
573 exec_prefix
574 prefix
575 program_transform_name
576 bindir
577 sbindir
578 libexecdir
579 datarootdir
580 datadir
581 sysconfdir
582 sharedstatedir
583 localstatedir
584 includedir
585 oldincludedir
586 docdir
587 infodir
588 htmldir
589 dvidir
590 pdfdir
591 psdir
592 libdir
593 localedir
594 mandir
595 DEFS
596 ECHO_C
597 ECHO_N
598 ECHO_T
599 LIBS
600 build_alias
601 host_alias
602 target_alias
603 build
604 build_cpu
605 build_vendor
606 build_os
607 host
608 host_cpu
609 host_vendor
610 host_os
611 target
612 target_cpu
613 target_vendor
614 target_os
615 INSTALL_PROGRAM
616 INSTALL_SCRIPT
617 INSTALL_DATA
618 CYGPATH_W
619 PACKAGE
620 VERSION
621 ACLOCAL
622 AUTOCONF
623 AUTOMAKE
624 AUTOHEADER
625 MAKEINFO
626 install_sh
627 STRIP
628 INSTALL_STRIP_PROGRAM
629 mkdir_p
630 AWK
631 SET_MAKE
632 am__leading_dot
633 AMTAR
634 am__tar
635 am__untar
636 PDB2PQR_VERSION
637 CXX
638 CXXFLAGS
639 LDFLAGS
640 CPPFLAGS
641 ac_ct_CXX
642 EXEEXT
643 OBJEXT
644 DEPDIR
645 am__include
646 am__quote
647 AMDEP_TRUE
648 AMDEP_FALSE
649 AMDEPBACKSLASH
650 CXXDEPMODE
651 am__fastdepCXX_TRUE
652 am__fastdepCXX_FALSE
653 py_path
654 PY_SHARED
655 PY_LDFLAGS
656 PY_HEADER
657 PY_FLAGS
658 PY_CFLAGS
659 PDB2PQR_SUBDIRS
660 URL
661 install_dir_var
662 website_install_var
663 action_install_var
664 with_propka
665 with_pdb2pka
666 LIBOBJS
667 LTLIBOBJS
668 last_website_install
669 last_prefix'
670 ac_subst_files=''
671 ac_precious_vars='build_alias
672 host_alias
673 target_alias
674 CXX
675 CXXFLAGS
676 LDFLAGS
677 CPPFLAGS
678 CCC'
679
680
681 # Initialize some variables set by options.
682 ac_init_help=
683 ac_init_version=false
684 # The variables have the same names as the options, with
685 # dashes changed to underlines.
686 cache_file=/dev/null
687 exec_prefix=NONE
688 no_create=
689 no_recursion=
690 prefix=NONE
691 program_prefix=NONE
692 program_suffix=NONE
693 program_transform_name=s,x,x,
694 silent=
695 site=
696 srcdir=
697 verbose=
698 x_includes=NONE
699 x_libraries=NONE
700
701 # Installation directory options.
702 # These are left unexpanded so users can "make install exec_prefix=/foo"
703 # and all the variables that are supposed to be based on exec_prefix
704 # by default will actually change.
705 # Use braces instead of parens because sh, perl, etc. also accept them.
706 # (The list follows the same order as the GNU Coding Standards.)
707 bindir='${exec_prefix}/bin'
708 sbindir='${exec_prefix}/sbin'
709 libexecdir='${exec_prefix}/libexec'
710 datarootdir='${prefix}/share'
711 datadir='${datarootdir}'
712 sysconfdir='${prefix}/etc'
713 sharedstatedir='${prefix}/com'
714 localstatedir='${prefix}/var'
715 includedir='${prefix}/include'
716 oldincludedir='/usr/include'
717 docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
718 infodir='${datarootdir}/info'
719 htmldir='${docdir}'
720 dvidir='${docdir}'
721 pdfdir='${docdir}'
722 psdir='${docdir}'
723 libdir='${exec_prefix}/lib'
724 localedir='${datarootdir}/locale'
725 mandir='${datarootdir}/man'
726
727 ac_prev=
728 ac_dashdash=
729 for ac_option
730 do
731 # If the previous option needs an argument, assign it.
732 if test -n "$ac_prev"; then
733 eval $ac_prev=\$ac_option
734 ac_prev=
735 continue
736 fi
737
738 case $ac_option in
739 *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
740 *) ac_optarg=yes ;;
741 esac
742
743 # Accept the important Cygnus configure options, so we can diagnose typos.
744
745 case $ac_dashdash$ac_option in
746 --)
747 ac_dashdash=yes ;;
748
749 -bindir | --bindir | --bindi | --bind | --bin | --bi)
750 ac_prev=bindir ;;
751 -bindir=* | --bindir=* | --bindi=* | --bind=* | --bin=* | --bi=*)
752 bindir=$ac_optarg ;;
753
754 -build | --build | --buil | --bui | --bu)
755 ac_prev=build_alias ;;
756 -build=* | --build=* | --buil=* | --bui=* | --bu=*)
757 build_alias=$ac_optarg ;;
758
759 -cache-file | --cache-file | --cache-fil | --cache-fi \
760 | --cache-f | --cache- | --cache | --cach | --cac | --ca | --c)
761 ac_prev=cache_file ;;
762 -cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \
763 | --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* | --c=*)
764 cache_file=$ac_optarg ;;
765
766 --config-cache | -C)
767 cache_file=config.cache ;;
768
769 -datadir | --datadir | --datadi | --datad)
770 ac_prev=datadir ;;
771 -datadir=* | --datadir=* | --datadi=* | --datad=*)
772 datadir=$ac_optarg ;;
773
774 -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
775 | --dataroo | --dataro | --datar)
776 ac_prev=datarootdir ;;
777 -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
778 | --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
779 datarootdir=$ac_optarg ;;
780
781 -disable-* | --disable-*)
782 ac_feature=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
783 # Reject names that are not valid shell variable names.
784 expr "x$ac_feature" : ".*[^-_$as_cr_alnum]" >/dev/null &&
785 { echo "$as_me: error: invalid feature name: $ac_feature" >&2
786 { (exit 1); exit 1; }; }
787 ac_feature=`echo $ac_feature | sed 's/-/_/g'`
788 eval enable_$ac_feature=no ;;
789
790 -docdir | --docdir | --docdi | --doc | --do)
791 ac_prev=docdir ;;
792 -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
793 docdir=$ac_optarg ;;
794
795 -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
796 ac_prev=dvidir ;;
797 -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
798 dvidir=$ac_optarg ;;
799
800 -enable-* | --enable-*)
801 ac_feature=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
802 # Reject names that are not valid shell variable names.
803 expr "x$ac_feature" : ".*[^-_$as_cr_alnum]" >/dev/null &&
804 { echo "$as_me: error: invalid feature name: $ac_feature" >&2
805 { (exit 1); exit 1; }; }
806 ac_feature=`echo $ac_feature | sed 's/-/_/g'`
807 eval enable_$ac_feature=\$ac_optarg ;;
808
809 -exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
810 | --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
811 | --exec | --exe | --ex)
812 ac_prev=exec_prefix ;;
813 -exec-prefix=* | --exec_prefix=* | --exec-prefix=* | --exec-prefi=* \
814 | --exec-pref=* | --exec-pre=* | --exec-pr=* | --exec-p=* | --exec-=* \
815 | --exec=* | --exe=* | --ex=*)
816 exec_prefix=$ac_optarg ;;
817
818 -gas | --gas | --ga | --g)
819 # Obsolete; use --with-gas.
820 with_gas=yes ;;
821
822 -help | --help | --hel | --he | -h)
823 ac_init_help=long ;;
824 -help=r* | --help=r* | --hel=r* | --he=r* | -hr*)
825 ac_init_help=recursive ;;
826 -help=s* | --help=s* | --hel=s* | --he=s* | -hs*)
827 ac_init_help=short ;;
828
829 -host | --host | --hos | --ho)
830 ac_prev=host_alias ;;
831 -host=* | --host=* | --hos=* | --ho=*)
832 host_alias=$ac_optarg ;;
833
834 -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
835 ac_prev=htmldir ;;
836 -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
837 | --ht=*)
838 htmldir=$ac_optarg ;;
839
840 -includedir | --includedir | --includedi | --included | --include \
841 | --includ | --inclu | --incl | --inc)
842 ac_prev=includedir ;;
843 -includedir=* | --includedir=* | --includedi=* | --included=* | --include=* \
844 | --includ=* | --inclu=* | --incl=* | --inc=*)
845 includedir=$ac_optarg ;;
846
847 -infodir | --infodir | --infodi | --infod | --info | --inf)
848 ac_prev=infodir ;;
849 -infodir=* | --infodir=* | --infodi=* | --infod=* | --info=* | --inf=*)
850 infodir=$ac_optarg ;;
851
852 -libdir | --libdir | --libdi | --libd)
853 ac_prev=libdir ;;
854 -libdir=* | --libdir=* | --libdi=* | --libd=*)
855 libdir=$ac_optarg ;;
856
857 -libexecdir | --libexecdir | --libexecdi | --libexecd | --libexec \
858 | --libexe | --libex | --libe)
859 ac_prev=libexecdir ;;
860 -libexecdir=* | --libexecdir=* | --libexecdi=* | --libexecd=* | --libexec=* \
861 | --libexe=* | --libex=* | --libe=*)
862 libexecdir=$ac_optarg ;;
863
864 -localedir | --localedir | --localedi | --localed | --locale)
865 ac_prev=localedir ;;
866 -localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
867 localedir=$ac_optarg ;;
868
869 -localstatedir | --localstatedir | --localstatedi | --localstated \
870 | --localstate | --localstat | --localsta | --localst | --locals)
871 ac_prev=localstatedir ;;
872 -localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
873 | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
874 localstatedir=$ac_optarg ;;
875
876 -mandir | --mandir | --mandi | --mand | --man | --ma | --m)
877 ac_prev=mandir ;;
878 -mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*)
879 mandir=$ac_optarg ;;
880
881 -nfp | --nfp | --nf)
882 # Obsolete; use --without-fp.
883 with_fp=no ;;
884
885 -no-create | --no-create | --no-creat | --no-crea | --no-cre \
886 | --no-cr | --no-c | -n)
887 no_create=yes ;;
888
889 -no-recursion | --no-recursion | --no-recursio | --no-recursi \
890 | --no-recurs | --no-recur | --no-recu | --no-rec | --no-re | --no-r)
891 no_recursion=yes ;;
892
893 -oldincludedir | --oldincludedir | --oldincludedi | --oldincluded \
894 | --oldinclude | --oldinclud | --oldinclu | --oldincl | --oldinc \
895 | --oldin | --oldi | --old | --ol | --o)
896 ac_prev=oldincludedir ;;
897 -oldincludedir=* | --oldincludedir=* | --oldincludedi=* | --oldincluded=* \
898 | --oldinclude=* | --oldinclud=* | --oldinclu=* | --oldincl=* | --oldinc=* \
899 | --oldin=* | --oldi=* | --old=* | --ol=* | --o=*)
900 oldincludedir=$ac_optarg ;;
901
902 -prefix | --prefix | --prefi | --pref | --pre | --pr | --p)
903 ac_prev=prefix ;;
904 -prefix=* | --prefix=* | --prefi=* | --pref=* | --pre=* | --pr=* | --p=*)
905 prefix=$ac_optarg ;;
906
907 -program-prefix | --program-prefix | --program-prefi | --program-pref \
908 | --program-pre | --program-pr | --program-p)
909 ac_prev=program_prefix ;;
910 -program-prefix=* | --program-prefix=* | --program-prefi=* \
911 | --program-pref=* | --program-pre=* | --program-pr=* | --program-p=*)
912 program_prefix=$ac_optarg ;;
913
914 -program-suffix | --program-suffix | --program-suffi | --program-suff \
915 | --program-suf | --program-su | --program-s)
916 ac_prev=program_suffix ;;
917 -program-suffix=* | --program-suffix=* | --program-suffi=* \
918 | --program-suff=* | --program-suf=* | --program-su=* | --program-s=*)
919 program_suffix=$ac_optarg ;;
920
921 -program-transform-name | --program-transform-name \
922 | --program-transform-nam | --program-transform-na \
923 | --program-transform-n | --program-transform- \
924 | --program-transform | --program-transfor \
925 | --program-transfo | --program-transf \
926 | --program-trans | --program-tran \
927 | --progr-tra | --program-tr | --program-t)
928 ac_prev=program_transform_name ;;
929 -program-transform-name=* | --program-transform-name=* \
930 | --program-transform-nam=* | --program-transform-na=* \
931 | --program-transform-n=* | --program-transform-=* \
932 | --program-transform=* | --program-transfor=* \
933 | --program-transfo=* | --program-transf=* \
934 | --program-trans=* | --program-tran=* \
935 | --progr-tra=* | --program-tr=* | --program-t=*)
936 program_transform_name=$ac_optarg ;;
937
938 -pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
939 ac_prev=pdfdir ;;
940 -pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
941 pdfdir=$ac_optarg ;;
942
943 -psdir | --psdir | --psdi | --psd | --ps)
944 ac_prev=psdir ;;
945 -psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
946 psdir=$ac_optarg ;;
947
948 -q | -quiet | --quiet | --quie | --qui | --qu | --q \
949 | -silent | --silent | --silen | --sile | --sil)
950 silent=yes ;;
951
952 -sbindir | --sbindir | --sbindi | --sbind | --sbin | --sbi | --sb)
953 ac_prev=sbindir ;;
954 -sbindir=* | --sbindir=* | --sbindi=* | --sbind=* | --sbin=* \
955 | --sbi=* | --sb=*)
956 sbindir=$ac_optarg ;;
957
958 -sharedstatedir | --sharedstatedir | --sharedstatedi \
959 | --sharedstated | --sharedstate | --sharedstat | --sharedsta \
960 | --sharedst | --shareds | --shared | --share | --shar \
961 | --sha | --sh)
962 ac_prev=sharedstatedir ;;
963 -sharedstatedir=* | --sharedstatedir=* | --sharedstatedi=* \
964 | --sharedstated=* | --sharedstate=* | --sharedstat=* | --sharedsta=* \
965 | --sharedst=* | --shareds=* | --shared=* | --share=* | --shar=* \
966 | --sha=* | --sh=*)
967 sharedstatedir=$ac_optarg ;;
968
969 -site | --site | --sit)
970 ac_prev=site ;;
971 -site=* | --site=* | --sit=*)
972 site=$ac_optarg ;;
973
974 -srcdir | --srcdir | --srcdi | --srcd | --src | --sr)
975 ac_prev=srcdir ;;
976 -srcdir=* | --srcdir=* | --srcdi=* | --srcd=* | --src=* | --sr=*)
977 srcdir=$ac_optarg ;;
978
979 -sysconfdir | --sysconfdir | --sysconfdi | --sysconfd | --sysconf \
980 | --syscon | --sysco | --sysc | --sys | --sy)
981 ac_prev=sysconfdir ;;
982 -sysconfdir=* | --sysconfdir=* | --sysconfdi=* | --sysconfd=* | --sysconf=* \
983 | --syscon=* | --sysco=* | --sysc=* | --sys=* | --sy=*)
984 sysconfdir=$ac_optarg ;;
985
986 -target | --target | --targe | --targ | --tar | --ta | --t)
987 ac_prev=target_alias ;;
988 -target=* | --target=* | --targe=* | --targ=* | --tar=* | --ta=* | --t=*)
989 target_alias=$ac_optarg ;;
990
991 -v | -verbose | --verbose | --verbos | --verbo | --verb)
992 verbose=yes ;;
993
994 -version | --version | --versio | --versi | --vers | -V)
995 ac_init_version=: ;;
996
997 -with-* | --with-*)
998 ac_package=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
999 # Reject names that are not valid shell variable names.
1000 expr "x$ac_package" : ".*[^-_$as_cr_alnum]" >/dev/null &&
1001 { echo "$as_me: error: invalid package name: $ac_package" >&2
1002 { (exit 1); exit 1; }; }
1003 ac_package=`echo $ac_package| sed 's/-/_/g'`
1004 eval with_$ac_package=\$ac_optarg ;;
1005
1006 -without-* | --without-*)
1007 ac_package=`expr "x$ac_option" : 'x-*without-\(.*\)'`
1008 # Reject names that are not valid shell variable names.
1009 expr "x$ac_package" : ".*[^-_$as_cr_alnum]" >/dev/null &&
1010 { echo "$as_me: error: invalid package name: $ac_package" >&2
1011 { (exit 1); exit 1; }; }
1012 ac_package=`echo $ac_package | sed 's/-/_/g'`
1013 eval with_$ac_package=no ;;
1014
1015 --x)
1016 # Obsolete; use --with-x.
1017 with_x=yes ;;
1018
1019 -x-includes | --x-includes | --x-include | --x-includ | --x-inclu \
1020 | --x-incl | --x-inc | --x-in | --x-i)
1021 ac_prev=x_includes ;;
1022 -x-includes=* | --x-includes=* | --x-include=* | --x-includ=* | --x-inclu=* \
1023 | --x-incl=* | --x-inc=* | --x-in=* | --x-i=*)
1024 x_includes=$ac_optarg ;;
1025
1026 -x-libraries | --x-libraries | --x-librarie | --x-librari \
1027 | --x-librar | --x-libra | --x-libr | --x-lib | --x-li | --x-l)
1028 ac_prev=x_libraries ;;
1029 -x-libraries=* | --x-libraries=* | --x-librarie=* | --x-librari=* \
1030 | --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
1031 x_libraries=$ac_optarg ;;
1032
1033 -*) { echo "$as_me: error: unrecognized option: $ac_option
1034 Try \`$0 --help' for more information." >&2
1035 { (exit 1); exit 1; }; }
1036 ;;
1037
1038 *=*)
1039 ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
1040 # Reject names that are not valid shell variable names.
1041 expr "x$ac_envvar" : ".*[^_$as_cr_alnum]" >/dev/null &&
1042 { echo "$as_me: error: invalid variable name: $ac_envvar" >&2
1043 { (exit 1); exit 1; }; }
1044 eval $ac_envvar=\$ac_optarg
1045 export $ac_envvar ;;
1046
1047 *)
1048 # FIXME: should be removed in autoconf 3.0.
1049 echo "$as_me: WARNING: you should use --build, --host, --target" >&2
1050 expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
1051 echo "$as_me: WARNING: invalid host type: $ac_option" >&2
1052 : ${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}
1053 ;;
1054
1055 esac
1056 done
1057
1058 if test -n "$ac_prev"; then
1059 ac_option=--`echo $ac_prev | sed 's/_/-/g'`
1060 { echo "$as_me: error: missing argument to $ac_option" >&2
1061 { (exit 1); exit 1; }; }
1062 fi
1063
1064 # Be sure to have absolute directory names.
1065 for ac_var in exec_prefix prefix bindir sbindir libexecdir datarootdir \
1066 datadir sysconfdir sharedstatedir localstatedir includedir \
1067 oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
1068 libdir localedir mandir
1069 do
1070 eval ac_val=\$$ac_var
1071 case $ac_val in
1072 [\\/$]* | ?:[\\/]* ) continue;;
1073 NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
1074 esac
1075 { echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
1076 { (exit 1); exit 1; }; }
1077 done
1078
1079 # There might be people who depend on the old broken behavior: `$host'
1080 # used to hold the argument of --host etc.
1081 # FIXME: To remove some day.
1082 build=$build_alias
1083 host=$host_alias
1084 target=$target_alias
1085
1086 # FIXME: To remove some day.
1087 if test "x$host_alias" != x; then
1088 if test "x$build_alias" = x; then
1089 cross_compiling=maybe
1090 echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host.
1091 If a cross compiler is detected then cross compile mode will be used." >&2
1092 elif test "x$build_alias" != "x$host_alias"; then
1093 cross_compiling=yes
1094 fi
1095 fi
1096
1097 ac_tool_prefix=
1098 test -n "$host_alias" && ac_tool_prefix=$host_alias-
1099
1100 test "$silent" = yes && exec 6>/dev/null
1101
1102
1103 ac_pwd=`pwd` && test -n "$ac_pwd" &&
1104 ac_ls_di=`ls -di .` &&
1105 ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
1106 { echo "$as_me: error: Working directory cannot be determined" >&2
1107 { (exit 1); exit 1; }; }
1108 test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
1109 { echo "$as_me: error: pwd does not report name of working directory" >&2
1110 { (exit 1); exit 1; }; }
1111
1112
1113 # Find the source files, if location was not specified.
1114 if test -z "$srcdir"; then
1115 ac_srcdir_defaulted=yes
1116 # Try the directory containing this script, then the parent directory.
1117 ac_confdir=`$as_dirname -- "$0" ||
1118 $as_expr X"$0" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
1119 X"$0" : 'X\(//\)[^/]' \| \
1120 X"$0" : 'X\(//\)$' \| \
1121 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
1122 echo X"$0" |
1123 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
1124 s//\1/
1125 q
1126 }
1127 /^X\(\/\/\)[^/].*/{
1128 s//\1/
1129 q
1130 }
1131 /^X\(\/\/\)$/{
1132 s//\1/
1133 q
1134 }
1135 /^X\(\/\).*/{
1136 s//\1/
1137 q
1138 }
1139 s/.*/./; q'`
1140 srcdir=$ac_confdir
1141 if test ! -r "$srcdir/$ac_unique_file"; then
1142 srcdir=..
1143 fi
1144 else
1145 ac_srcdir_defaulted=no
1146 fi
1147 if test ! -r "$srcdir/$ac_unique_file"; then
1148 test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
1149 { echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
1150 { (exit 1); exit 1; }; }
1151 fi
1152 ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
1153 ac_abs_confdir=`(
1154 cd "$srcdir" && test -r "./$ac_unique_file" || { echo "$as_me: error: $ac_msg" >&2
1155 { (exit 1); exit 1; }; }
1156 pwd)`
1157 # When building in place, set srcdir=.
1158 if test "$ac_abs_confdir" = "$ac_pwd"; then
1159 srcdir=.
1160 fi
1161 # Remove unnecessary trailing slashes from srcdir.
1162 # Double slashes in file names in object file debugging info
1163 # mess up M-x gdb in Emacs.
1164 case $srcdir in
1165 */) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
1166 esac
1167 for ac_var in $ac_precious_vars; do
1168 eval ac_env_${ac_var}_set=\${${ac_var}+set}
1169 eval ac_env_${ac_var}_value=\$${ac_var}
1170 eval ac_cv_env_${ac_var}_set=\${${ac_var}+set}
1171 eval ac_cv_env_${ac_var}_value=\$${ac_var}
1172 done
1173
1174 #
1175 # Report the --help message.
1176 #
1177 if test "$ac_init_help" = "long"; then
1178 # Omit some internal or obsolete options to make the list less imposing.
1179 # This message is too long to be a string in the A/UX 3.1 sh.
1180 cat <<_ACEOF
1181 \`configure' configures PDB2PQR 1.3.0 to adapt to many kinds of systems.
1182
1183 Usage: $0 [OPTION]... [VAR=VALUE]...
1184
1185 To assign environment variables (e.g., CC, CFLAGS...), specify them as
1186 VAR=VALUE. See below for descriptions of some of the useful variables.
1187
1188 Defaults for the options are specified in brackets.
1189
1190 Configuration:
1191 -h, --help display this help and exit
1192 --help=short display options specific to this package
1193 --help=recursive display the short help of all the included packages
1194 -V, --version display version information and exit
1195 -q, --quiet, --silent do not print \`checking...' messages
1196 --cache-file=FILE cache test results in FILE [disabled]
1197 -C, --config-cache alias for \`--cache-file=config.cache'
1198 -n, --no-create do not create output files
1199 --srcdir=DIR find the sources in DIR [configure dir or \`..']
1200
1201 Installation directories:
1202 --prefix=PREFIX install architecture-independent files in PREFIX
1203 [$ac_default_prefix]
1204 --exec-prefix=EPREFIX install architecture-dependent files in EPREFIX
1205 [PREFIX]
1206
1207 By default, \`make install' will install all the files in
1208 \`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
1209 an installation prefix other than \`$ac_default_prefix' using \`--prefix',
1210 for instance \`--prefix=\$HOME'.
1211
1212 For better control, use the options below.
1213
1214 Fine tuning of the installation directories:
1215 --bindir=DIR user executables [EPREFIX/bin]
1216 --sbindir=DIR system admin executables [EPREFIX/sbin]
1217 --libexecdir=DIR program executables [EPREFIX/libexec]
1218 --sysconfdir=DIR read-only single-machine data [PREFIX/etc]
1219 --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]
1220 --localstatedir=DIR modifiable single-machine data [PREFIX/var]
1221 --libdir=DIR object code libraries [EPREFIX/lib]
1222 --includedir=DIR C header files [PREFIX/include]
1223 --oldincludedir=DIR C header files for non-gcc [/usr/include]
1224 --datarootdir=DIR read-only arch.-independent data root [PREFIX/share]
1225 --datadir=DIR read-only architecture-independent data [DATAROOTDIR]
1226 --infodir=DIR info documentation [DATAROOTDIR/info]
1227 --localedir=DIR locale-dependent data [DATAROOTDIR/locale]
1228 --mandir=DIR man documentation [DATAROOTDIR/man]
1229 --docdir=DIR documentation root [DATAROOTDIR/doc/pdb2pqr]
1230 --htmldir=DIR html documentation [DOCDIR]
1231 --dvidir=DIR dvi documentation [DOCDIR]
1232 --pdfdir=DIR pdf documentation [DOCDIR]
1233 --psdir=DIR ps documentation [DOCDIR]
1234 _ACEOF
1235
1236 cat <<\_ACEOF
1237
1238 Program names:
1239 --program-prefix=PREFIX prepend PREFIX to installed program names
1240 --program-suffix=SUFFIX append SUFFIX to installed program names
1241 --program-transform-name=PROGRAM run sed PROGRAM on installed program names
1242
1243 System types:
1244 --build=BUILD configure for building on BUILD [guessed]
1245 --host=HOST cross-compile to build programs to run on HOST [BUILD]
1246 --target=TARGET configure for building compilers for TARGET [HOST]
1247 _ACEOF
1248 fi
1249
1250 if test -n "$ac_init_help"; then
1251 case $ac_init_help in
1252 short | recursive ) echo "Configuration of PDB2PQR 1.3.0:";;
1253 esac
1254 cat <<\_ACEOF
1255
1256 Optional Features:
1257 --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no)
1258 --enable-FEATURE[=ARG] include FEATURE [ARG=yes]
1259 --disable-dependency-tracking speeds up one-time build
1260 --enable-dependency-tracking do not reject slow dependency extractors
1261 --disable-propka Disable propka compilation
1262 --disable-pdb2pka Disable pdb2pka compilation
1263
1264 Optional Packages:
1265 --with-PACKAGE[=ARG] use PACKAGE [ARG=yes]
1266 --without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no)
1267 --with-python=PYTHONPATH Specify Python location.
1268 --with-url=URL Set url for the website. Default http://fully_qualified_domain/pdb2pqr.
1269 --with-max-atoms=MAX_ATOMS Sets the maximum number of atoms in a protein for non-Opal job submission. Default is 10000
1270 --with-opal=OPALURL Set url for the Opal service. Default is http://ws.nbcr.net:8080/axis-1.2.1/services/Pdb2pqrOpalService.
1271
1272 Some influential environment variables:
1273 CXX C++ compiler command
1274 CXXFLAGS C++ compiler flags
1275 LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a
1276 nonstandard directory <lib dir>
1277 CPPFLAGS C/C++/Objective C preprocessor flags, e.g. -I<include dir> if
1278 you have headers in a nonstandard directory <include dir>
1279
1280 Use these variables to override the choices made by `configure' or to help
1281 it to find libraries and programs with nonstandard names/locations.
1282
1283 Report bugs to <todd@ccb.wustl.edu>.
1284 _ACEOF
1285 ac_status=$?
1286 fi
1287
1288 if test "$ac_init_help" = "recursive"; then
1289 # If there are subdirs, report their specific --help.
1290 for ac_dir in : $ac_subdirs_all; do test "x$ac_dir" = x: && continue
1291 test -d "$ac_dir" || continue
1292 ac_builddir=.
1293
1294 case "$ac_dir" in
1295 .) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
1296 *)
1297 ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
1298 # A ".." for each directory in $ac_dir_suffix.
1299 ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
1300 case $ac_top_builddir_sub in
1301 "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
1302 *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
1303 esac ;;
1304 esac
1305 ac_abs_top_builddir=$ac_pwd
1306 ac_abs_builddir=$ac_pwd$ac_dir_suffix
1307 # for backward compatibility:
1308 ac_top_builddir=$ac_top_build_prefix
1309
1310 case $srcdir in
1311 .) # We are building in place.
1312 ac_srcdir=.
1313 ac_top_srcdir=$ac_top_builddir_sub
1314 ac_abs_top_srcdir=$ac_pwd ;;
1315 [\\/]* | ?:[\\/]* ) # Absolute name.
1316 ac_srcdir=$srcdir$ac_dir_suffix;
1317 ac_top_srcdir=$srcdir
1318 ac_abs_top_srcdir=$srcdir ;;
1319 *) # Relative name.
1320 ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
1321 ac_top_srcdir=$ac_top_build_prefix$srcdir
1322 ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
1323 esac
1324 ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
1325
1326 cd "$ac_dir" || { ac_status=$?; continue; }
1327 # Check for guested configure.
1328 if test -f "$ac_srcdir/configure.gnu"; then
1329 echo &&
1330 $SHELL "$ac_srcdir/configure.gnu" --help=recursive
1331 elif test -f "$ac_srcdir/configure"; then
1332 echo &&
1333 $SHELL "$ac_srcdir/configure" --help=recursive
1334 else
1335 echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
1336 fi || ac_status=$?
1337 cd "$ac_pwd" || { ac_status=$?; break; }
1338 done
1339 fi
1340
1341 test -n "$ac_init_help" && exit $ac_status
1342 if $ac_init_version; then
1343 cat <<\_ACEOF
1344 PDB2PQR configure 1.3.0
1345 generated by GNU Autoconf 2.60
1346
1347 Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
1348 2002, 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
1349 This configure script is free software; the Free Software Foundation
1350 gives unlimited permission to copy, distribute and modify it.
1351 _ACEOF
1352 exit
1353 fi
1354 cat >config.log <<_ACEOF
1355 This file contains any messages produced by compilers while
1356 running configure, to aid debugging if configure makes a mistake.
1357
1358 It was created by PDB2PQR $as_me 1.3.0, which was
1359 generated by GNU Autoconf 2.60. Invocation command line was
1360
1361 $ $0 $@
1362
1363 _ACEOF
1364 exec 5>>config.log
1365 {
1366 cat <<_ASUNAME
1367 ## --------- ##
1368 ## Platform. ##
1369 ## --------- ##
1370
1371 hostname = `(hostname || uname -n) 2>/dev/null | sed 1q`
1372 uname -m = `(uname -m) 2>/dev/null || echo unknown`
1373 uname -r = `(uname -r) 2>/dev/null || echo unknown`
1374 uname -s = `(uname -s) 2>/dev/null || echo unknown`
1375 uname -v = `(uname -v) 2>/dev/null || echo unknown`
1376
1377 /usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown`
1378 /bin/uname -X = `(/bin/uname -X) 2>/dev/null || echo unknown`
1379
1380 /bin/arch = `(/bin/arch) 2>/dev/null || echo unknown`
1381 /usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown`
1382 /usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
1383 /usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown`
1384 /bin/machine = `(/bin/machine) 2>/dev/null || echo unknown`
1385 /usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown`
1386 /bin/universe = `(/bin/universe) 2>/dev/null || echo unknown`
1387
1388 _ASUNAME
1389
1390 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
1391 for as_dir in $PATH
1392 do
1393 IFS=$as_save_IFS
1394 test -z "$as_dir" && as_dir=.
1395 echo "PATH: $as_dir"
1396 done
1397 IFS=$as_save_IFS
1398
1399 } >&5
1400
1401 cat >&5 <<_ACEOF
1402
1403
1404 ## ----------- ##
1405 ## Core tests. ##
1406 ## ----------- ##
1407
1408 _ACEOF
1409
1410
1411 # Keep a trace of the command line.
1412 # Strip out --no-create and --no-recursion so they do not pile up.
1413 # Strip out --silent because we don't want to record it for future runs.
1414 # Also quote any args containing shell meta-characters.
1415 # Make two passes to allow for proper duplicate-argument suppression.
1416 ac_configure_args=
1417 ac_configure_args0=
1418 ac_configure_args1=
1419 ac_must_keep_next=false
1420 for ac_pass in 1 2
1421 do
1422 for ac_arg
1423 do
1424 case $ac_arg in
1425 -no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;;
1426 -q | -quiet | --quiet | --quie | --qui | --qu | --q \
1427 | -silent | --silent | --silen | --sile | --sil)
1428 continue ;;
1429 *\'*)
1430 ac_arg=`echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
1431 esac
1432 case $ac_pass in
1433 1) ac_configure_args0="$ac_configure_args0 '$ac_arg'" ;;
1434 2)
1435 ac_configure_args1="$ac_configure_args1 '$ac_arg'"
1436 if test $ac_must_keep_next = true; then
1437 ac_must_keep_next=false # Got value, back to normal.
1438 else
1439 case $ac_arg in
1440 *=* | --config-cache | -C | -disable-* | --disable-* \
1441 | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
1442 | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
1443 | -with-* | --with-* | -without-* | --without-* | --x)
1444 case "$ac_configure_args0 " in
1445 "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
1446 esac
1447 ;;
1448 -* ) ac_must_keep_next=true ;;
1449 esac
1450 fi
1451 ac_configure_args="$ac_configure_args '$ac_arg'"
1452 ;;
1453 esac
1454 done
1455 done
1456 $as_unset ac_configure_args0 || test "${ac_configure_args0+set}" != set || { ac_configure_args0=; export ac_configure_args0; }
1457 $as_unset ac_configure_args1 || test "${ac_configure_args1+set}" != set || { ac_configure_args1=; export ac_configure_args1; }
1458
1459 # When interrupted or exit'd, cleanup temporary files, and complete
1460 # config.log. We remove comments because anyway the quotes in there
1461 # would cause problems or look ugly.
1462 # WARNING: Use '\'' to represent an apostrophe within the trap.
1463 # WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
1464 trap 'exit_status=$?
1465 # Save into config.log some information that might help in debugging.
1466 {
1467 echo
1468
1469 cat <<\_ASBOX
1470 ## ---------------- ##
1471 ## Cache variables. ##
1472 ## ---------------- ##
1473 _ASBOX
1474 echo
1475 # The following way of writing the cache mishandles newlines in values,
1476 (
1477 for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do
1478 eval ac_val=\$$ac_var
1479 case $ac_val in #(
1480 *${as_nl}*)
1481 case $ac_var in #(
1482 *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
1483 echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
1484 esac
1485 case $ac_var in #(
1486 _ | IFS | as_nl) ;; #(
1487 *) $as_unset $ac_var ;;
1488 esac ;;
1489 esac
1490 done
1491 (set) 2>&1 |
1492 case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
1493 *${as_nl}ac_space=\ *)
1494 sed -n \
1495 "s/'\''/'\''\\\\'\'''\''/g;
1496 s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
1497 ;; #(
1498 *)
1499 sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
1500 ;;
1501 esac |
1502 sort
1503 )
1504 echo
1505
1506 cat <<\_ASBOX
1507 ## ----------------- ##
1508 ## Output variables. ##
1509 ## ----------------- ##
1510 _ASBOX
1511 echo
1512 for ac_var in $ac_subst_vars
1513 do
1514 eval ac_val=\$$ac_var
1515 case $ac_val in
1516 *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
1517 esac
1518 echo "$ac_var='\''$ac_val'\''"
1519 done | sort
1520 echo
1521
1522 if test -n "$ac_subst_files"; then
1523 cat <<\_ASBOX
1524 ## ------------------- ##
1525 ## File substitutions. ##
1526 ## ------------------- ##
1527 _ASBOX
1528 echo
1529 for ac_var in $ac_subst_files
1530 do
1531 eval ac_val=\$$ac_var
1532 case $ac_val in
1533 *\'\''*) ac_val=`echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
1534 esac
1535 echo "$ac_var='\''$ac_val'\''"
1536 done | sort
1537 echo
1538 fi
1539
1540 if test -s confdefs.h; then
1541 cat <<\_ASBOX
1542 ## ----------- ##
1543 ## confdefs.h. ##
1544 ## ----------- ##
1545 _ASBOX
1546 echo
1547 cat confdefs.h
1548 echo
1549 fi
1550 test "$ac_signal" != 0 &&
1551 echo "$as_me: caught signal $ac_signal"
1552 echo "$as_me: exit $exit_status"
1553 } >&5
1554 rm -f core *.core core.conftest.* &&
1555 rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
1556 exit $exit_status
1557 ' 0
1558 for ac_signal in 1 2 13 15; do
1559 trap 'ac_signal='$ac_signal'; { (exit 1); exit 1; }' $ac_signal
1560 done
1561 ac_signal=0
1562
1563 # confdefs.h avoids OS command line length limits that DEFS can exceed.
1564 rm -f -r conftest* confdefs.h
1565
1566 # Predefined preprocessor variables.
1567
1568 cat >>confdefs.h <<_ACEOF
1569 #define PACKAGE_NAME "$PACKAGE_NAME"
1570 _ACEOF
1571
1572
1573 cat >>confdefs.h <<_ACEOF
1574 #define PACKAGE_TARNAME "$PACKAGE_TARNAME"
1575 _ACEOF
1576
1577
1578 cat >>confdefs.h <<_ACEOF
1579 #define PACKAGE_VERSION "$PACKAGE_VERSION"
1580 _ACEOF
1581
1582
1583 cat >>confdefs.h <<_ACEOF
1584 #define PACKAGE_STRING "$PACKAGE_STRING"
1585 _ACEOF
1586
1587
1588 cat >>confdefs.h <<_ACEOF
1589 #define PACKAGE_BUGREPORT "$PACKAGE_BUGREPORT"
1590 _ACEOF
1591
1592
1593 # Let the site file select an alternate cache file if it wants to.
1594 # Prefer explicitly selected file to automatically selected ones.
1595 if test -n "$CONFIG_SITE"; then
1596 set x "$CONFIG_SITE"
1597 elif test "x$prefix" != xNONE; then
1598 set x "$prefix/share/config.site" "$prefix/etc/config.site"
1599 else
1600 set x "$ac_default_prefix/share/config.site" \
1601 "$ac_default_prefix/etc/config.site"
1602 fi
1603 shift
1604 for ac_site_file
1605 do
1606 if test -r "$ac_site_file"; then
1607 { echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
1608 echo "$as_me: loading site script $ac_site_file" >&6;}
1609 sed 's/^/| /' "$ac_site_file" >&5
1610 . "$ac_site_file"
1611 fi
1612 done
1613
1614 if test -r "$cache_file"; then
1615 # Some versions of bash will fail to source /dev/null (special
1616 # files actually), so we avoid doing that.
1617 if test -f "$cache_file"; then
1618 { echo "$as_me:$LINENO: loading cache $cache_file" >&5
1619 echo "$as_me: loading cache $cache_file" >&6;}
1620 case $cache_file in
1621 [\\/]* | ?:[\\/]* ) . "$cache_file";;
1622 *) . "./$cache_file";;
1623 esac
1624 fi
1625 else
1626 { echo "$as_me:$LINENO: creating cache $cache_file" >&5
1627 echo "$as_me: creating cache $cache_file" >&6;}
1628 >$cache_file
1629 fi
1630
1631 # Check that the precious variables saved in the cache have kept the same
1632 # value.
1633 ac_cache_corrupted=false
1634 for ac_var in $ac_precious_vars; do
1635 eval ac_old_set=\$ac_cv_env_${ac_var}_set
1636 eval ac_new_set=\$ac_env_${ac_var}_set
1637 eval ac_old_val=\$ac_cv_env_${ac_var}_value
1638 eval ac_new_val=\$ac_env_${ac_var}_value
1639 case $ac_old_set,$ac_new_set in
1640 set,)
1641 { echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
1642 echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
1643 ac_cache_corrupted=: ;;
1644 ,set)
1645 { echo "$as_me:$LINENO: error: \`$ac_var' was not set in the previous run" >&5
1646 echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
1647 ac_cache_corrupted=: ;;
1648 ,);;
1649 *)
1650 if test "x$ac_old_val" != "x$ac_new_val"; then
1651 { echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
1652 echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
1653 { echo "$as_me:$LINENO: former value: $ac_old_val" >&5
1654 echo "$as_me: former value: $ac_old_val" >&2;}
1655 { echo "$as_me:$LINENO: current value: $ac_new_val" >&5
1656 echo "$as_me: current value: $ac_new_val" >&2;}
1657 ac_cache_corrupted=:
1658 fi;;
1659 esac
1660 # Pass precious variables to config.status.
1661 if test "$ac_new_set" = set; then
1662 case $ac_new_val in
1663 *\'*) ac_arg=$ac_var=`echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
1664 *) ac_arg=$ac_var=$ac_new_val ;;
1665 esac
1666 case " $ac_configure_args " in
1667 *" '$ac_arg' "*) ;; # Avoid dups. Use of quotes ensures accuracy.
1668 *) ac_configure_args="$ac_configure_args '$ac_arg'" ;;
1669 esac
1670 fi
1671 done
1672 if $ac_cache_corrupted; then
1673 { echo "$as_me:$LINENO: error: changes in the environment can compromise the build" >&5
1674 echo "$as_me: error: changes in the environment can compromise the build" >&2;}
1675 { { echo "$as_me:$LINENO: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&5
1676 echo "$as_me: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&2;}
1677 { (exit 1); exit 1; }; }
1678 fi
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704 ac_ext=c
1705 ac_cpp='$CPP $CPPFLAGS'
1706 ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
1707 ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
1708 ac_compiler_gnu=$ac_cv_c_compiler_gnu
1709
1710
1711
1712 ac_aux_dir=
1713 for ac_dir in config "$srcdir"/config; do
1714 if test -f "$ac_dir/install-sh"; then
1715 ac_aux_dir=$ac_dir
1716 ac_install_sh="$ac_aux_dir/install-sh -c"
1717 break
1718 elif test -f "$ac_dir/install.sh"; then
1719 ac_aux_dir=$ac_dir
1720 ac_install_sh="$ac_aux_dir/install.sh -c"
1721 break
1722 elif test -f "$ac_dir/shtool"; then
1723 ac_aux_dir=$ac_dir
1724 ac_install_sh="$ac_aux_dir/shtool install -c"
1725 break
1726 fi
1727 done
1728 if test -z "$ac_aux_dir"; then
1729 { { echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in config \"$srcdir\"/config" >&5
1730 echo "$as_me: error: cannot find install-sh or install.sh in config \"$srcdir\"/config" >&2;}
1731 { (exit 1); exit 1; }; }
1732 fi
1733
1734 # These three variables are undocumented and unsupported,
1735 # and are intended to be withdrawn in a future Autoconf release.
1736 # They can cause serious problems if a builder's source tree is in a directory
1737 # whose full name contains unusual characters.
1738 ac_config_guess="$SHELL $ac_aux_dir/config.guess" # Please don't use this var.
1739 ac_config_sub="$SHELL $ac_aux_dir/config.sub" # Please don't use this var.
1740 ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var.
1741
1742
1743 # Make sure we can run config.sub.
1744 $SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
1745 { { echo "$as_me:$LINENO: error: cannot run $SHELL $ac_aux_dir/config.sub" >&5
1746 echo "$as_me: error: cannot run $SHELL $ac_aux_dir/config.sub" >&2;}
1747 { (exit 1); exit 1; }; }
1748
1749 { echo "$as_me:$LINENO: checking build system type" >&5
1750 echo $ECHO_N "checking build system type... $ECHO_C" >&6; }
1751 if test "${ac_cv_build+set}" = set; then
1752 echo $ECHO_N "(cached) $ECHO_C" >&6
1753 else
1754 ac_build_alias=$build_alias
1755 test "x$ac_build_alias" = x &&
1756 ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
1757 test "x$ac_build_alias" = x &&
1758 { { echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
1759 echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
1760 { (exit 1); exit 1; }; }
1761 ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
1762 { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
1763 echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&2;}
1764 { (exit 1); exit 1; }; }
1765
1766 fi
1767 { echo "$as_me:$LINENO: result: $ac_cv_build" >&5
1768 echo "${ECHO_T}$ac_cv_build" >&6; }
1769 case $ac_cv_build in
1770 *-*-*) ;;
1771 *) { { echo "$as_me:$LINENO: error: invalid value of canonical build" >&5
1772 echo "$as_me: error: invalid value of canonical build" >&2;}
1773 { (exit 1); exit 1; }; };;
1774 esac
1775 build=$ac_cv_build
1776 ac_save_IFS=$IFS; IFS='-'
1777 set x $ac_cv_build
1778 shift
1779 build_cpu=$1
1780 build_vendor=$2
1781 shift; shift
1782 # Remember, the first character of IFS is used to create $*,
1783 # except with old shells:
1784 build_os=$*
1785 IFS=$ac_save_IFS
1786 case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
1787
1788
1789 { echo "$as_me:$LINENO: checking host system type" >&5
1790 echo $ECHO_N "checking host system type... $ECHO_C" >&6; }
1791 if test "${ac_cv_host+set}" = set; then
1792 echo $ECHO_N "(cached) $ECHO_C" >&6
1793 else
1794 if test "x$host_alias" = x; then
1795 ac_cv_host=$ac_cv_build
1796 else
1797 ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
1798 { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
1799 echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&2;}
1800 { (exit 1); exit 1; }; }
1801 fi
1802
1803 fi
1804 { echo "$as_me:$LINENO: result: $ac_cv_host" >&5
1805 echo "${ECHO_T}$ac_cv_host" >&6; }
1806 case $ac_cv_host in
1807 *-*-*) ;;
1808 *) { { echo "$as_me:$LINENO: error: invalid value of canonical host" >&5
1809 echo "$as_me: error: invalid value of canonical host" >&2;}
1810 { (exit 1); exit 1; }; };;
1811 esac
1812 host=$ac_cv_host
1813 ac_save_IFS=$IFS; IFS='-'
1814 set x $ac_cv_host
1815 shift
1816 host_cpu=$1
1817 host_vendor=$2
1818 shift; shift
1819 # Remember, the first character of IFS is used to create $*,
1820 # except with old shells:
1821 host_os=$*
1822 IFS=$ac_save_IFS
1823 case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
1824
1825
1826 { echo "$as_me:$LINENO: checking target system type" >&5
1827 echo $ECHO_N "checking target system type... $ECHO_C" >&6; }
1828 if test "${ac_cv_target+set}" = set; then
1829 echo $ECHO_N "(cached) $ECHO_C" >&6
1830 else
1831 if test "x$target_alias" = x; then
1832 ac_cv_target=$ac_cv_host
1833 else
1834 ac_cv_target=`$SHELL "$ac_aux_dir/config.sub" $target_alias` ||
1835 { { echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $target_alias failed" >&5
1836 echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $target_alias failed" >&2;}
1837 { (exit 1); exit 1; }; }
1838 fi
1839
1840 fi
1841 { echo "$as_me:$LINENO: result: $ac_cv_target" >&5
1842 echo "${ECHO_T}$ac_cv_target" >&6; }
1843 case $ac_cv_target in
1844 *-*-*) ;;
1845 *) { { echo "$as_me:$LINENO: error: invalid value of canonical target" >&5
1846 echo "$as_me: error: invalid value of canonical target" >&2;}
1847 { (exit 1); exit 1; }; };;
1848 esac
1849 target=$ac_cv_target
1850 ac_save_IFS=$IFS; IFS='-'
1851 set x $ac_cv_target
1852 shift
1853 target_cpu=$1
1854 target_vendor=$2
1855 shift; shift
1856 # Remember, the first character of IFS is used to create $*,
1857 # except with old shells:
1858 target_os=$*
1859 IFS=$ac_save_IFS
1860 case $target_os in *\ *) target_os=`echo "$target_os" | sed 's/ /-/g'`;; esac
1861
1862
1863 # The aliases save the names the user supplied, while $host etc.
1864 # will get canonicalized.
1865 test -n "$target_alias" &&
1866 test "$program_prefix$program_suffix$program_transform_name" = \
1867 NONENONEs,x,x, &&
1868 program_prefix=${target_alias}-
1869
1870 # Added by J.Ren
1871
1872 chmod 755 .
1873
1874 pwd > cwdfile
1875 cwd=`awk -F"/" '{ print $NF }' cwdfile`
1876 rm cwdfile
1877
1878 if test ${prefix} == "NONE" ; then
1879 if test `whoami` = "root" ; then
1880 if test -d "/var/www/html/pdb2pqr" ; then
1881 echo "*** Warning: As root, your default --prefix is set to /var/www/html/pdb2pqr."
1882 echo " However, we have detected that /var/www/html/pdb2pqr already exists."
1883 echo " You may run configure again and specify a different --prefix"
1884 echo " Do you want to overwrite this directory? (Y/N)"
1885 read choice
1886 while test $choice != "Y" && test $choice != "y" && test $choice != "N" && test $choice != "n"
1887 do
1888 echo You have entered $choice. Please enter Y or N:
1889 read choice
1890 done
1891 if test $choice = "N" || test $choice = "n" ; then
1892 echo Please run configure again and specify a different --prefix
1893 exit 0
1894 fi
1895 fi
1896 prefix=/var/www/html/pdb2pqr
1897 else
1898 if test -d ${HOME}/pdb2pqr ; then
1899 echo "*** Warning: As a regular user, your default --prefix is set to ${HOME}/pdb2pqr."
1900 echo " However, we have detected that ${HOME}/pdb2pqr already exists."
1901 echo " You may run configure again and specify --prefix"
1902 echo " You may run configure again and specify a different --prefix"
1903 echo " Do you want to overwrite this directory? (Y/N)"
1904 read choice
1905 while test $choice != "Y" && test $choice != "y" && test $choice != "N" && test $choice != "n"
1906 do
1907 echo You have entered $choice. Please enter Y or N:
1908 read choice
1909 done
1910 if test $choice = "N" || test $choice = "n" ; then
1911 echo Please run configure again and specify a different --prefix
1912 exit 0
1913 fi
1914 fi
1915 prefix=${HOME}/pdb2pqr
1916 fi
1917 default_prefix_used="true"
1918 fi
1919
1920 echo ${prefix} > prefix_test
1921 isslash=`awk -F"/" '{print $NF}' prefix_test`
1922 rm -f prefix_test
1923
1924 if ! test -z $isslash ; then
1925 prefix=${prefix}/
1926 fi
1927
1928
1929 # Find a good install program. We prefer a C program (faster),
1930 # so one script is as good as another. But avoid the broken or
1931 # incompatible versions:
1932 # SysV /etc/install, /usr/sbin/install
1933 # SunOS /usr/etc/install
1934 # IRIX /sbin/install
1935 # AIX /bin/install
1936 # AmigaOS /C/install, which installs bootblocks on floppy discs
1937 # AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag
1938 # AFS /usr/afsws/bin/install, which mishandles nonexistent args
1939 # SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
1940 # OS/2's system install, which has a completely different semantic
1941 # ./install, which can be erroneously created by make from ./install.sh.
1942 { echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
1943 echo $ECHO_N "checking for a BSD-compatible install... $ECHO_C" >&6; }
1944 if test -z "$INSTALL"; then
1945 if test "${ac_cv_path_install+set}" = set; then
1946 echo $ECHO_N "(cached) $ECHO_C" >&6
1947 else
1948 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
1949 for as_dir in $PATH
1950 do
1951 IFS=$as_save_IFS
1952 test -z "$as_dir" && as_dir=.
1953 # Account for people who put trailing slashes in PATH elements.
1954 case $as_dir/ in
1955 ./ | .// | /cC/* | \
1956 /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \
1957 ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \
1958 /usr/ucb/* ) ;;
1959 *)
1960 # OSF1 and SCO ODT 3.0 have their own names for install.
1961 # Don't use installbsd from OSF since it installs stuff as root
1962 # by default.
1963 for ac_prog in ginstall scoinst install; do
1964 for ac_exec_ext in '' $ac_executable_extensions; do
1965 if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_executable_p "$as_dir/$ac_prog$ac_exec_ext"; }; then
1966 if test $ac_prog = install &&
1967 grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
1968 # AIX install. It has an incompatible calling convention.
1969 :
1970 elif test $ac_prog = install &&
1971 grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
1972 # program-specific install script used by HP pwplus--don't use.
1973 :
1974 else
1975 ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
1976 break 3
1977 fi
1978 fi
1979 done
1980 done
1981 ;;
1982 esac
1983 done
1984 IFS=$as_save_IFS
1985
1986
1987 fi
1988 if test "${ac_cv_path_install+set}" = set; then
1989 INSTALL=$ac_cv_path_install
1990 else
1991 # As a last resort, use the slow shell script. Don't cache a
1992 # value for INSTALL within a source directory, because that will
1993 # break other packages using the cache if that directory is
1994 # removed, or if the value is a relative name.
1995 INSTALL=$ac_install_sh
1996 fi
1997 fi
1998 { echo "$as_me:$LINENO: result: $INSTALL" >&5
1999 echo "${ECHO_T}$INSTALL" >&6; }
2000
2001 # Use test -z because SunOS4 sh mishandles braces in ${var-val}.
2002 # It thinks the first close brace ends the variable substitution.
2003 test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'
2004
2005 test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}'
2006
2007 test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
2008
2009
2010 am__api_version="1.9"
2011 { echo "$as_me:$LINENO: checking whether build environment is sane" >&5
2012 echo $ECHO_N "checking whether build environment is sane... $ECHO_C" >&6; }
2013 # Just in case
2014 sleep 1
2015 echo timestamp > conftest.file
2016 # Do `set' in a subshell so we don't clobber the current shell's
2017 # arguments. Must try -L first in case configure is actually a
2018 # symlink; some systems play weird games with the mod time of symlinks
2019 # (eg FreeBSD returns the mod time of the symlink's containing
2020 # directory).
2021 if (
2022 set X `ls -Lt $srcdir/configure conftest.file 2> /dev/null`
2023 if test "$*" = "X"; then
2024 # -L didn't work.
2025 set X `ls -t $srcdir/configure conftest.file`
2026 fi
2027 rm -f conftest.file
2028 if test "$*" != "X $srcdir/configure conftest.file" \
2029 && test "$*" != "X conftest.file $srcdir/configure"; then
2030
2031 # If neither matched, then we have a broken ls. This can happen
2032 # if, for instance, CONFIG_SHELL is bash and it inherits a
2033 # broken ls alias from the environment. This has actually
2034 # happened. Such a system could not be considered "sane".
2035 { { echo "$as_me:$LINENO: error: ls -t appears to fail. Make sure there is not a broken
2036 alias in your environment" >&5
2037 echo "$as_me: error: ls -t appears to fail. Make sure there is not a broken
2038 alias in your environment" >&2;}
2039 { (exit 1); exit 1; }; }
2040 fi
2041
2042 test "$2" = conftest.file
2043 )
2044 then
2045 # Ok.
2046 :
2047 else
2048 { { echo "$as_me:$LINENO: error: newly created file is older than distributed files!
2049 Check your system clock" >&5
2050 echo "$as_me: error: newly created file is older than distributed files!
2051 Check your system clock" >&2;}
2052 { (exit 1); exit 1; }; }
2053 fi
2054 { echo "$as_me:$LINENO: result: yes" >&5
2055 echo "${ECHO_T}yes" >&6; }
2056 test "$program_prefix" != NONE &&
2057 program_transform_name="s&^&$program_prefix&;$program_transform_name"
2058 # Use a double $ so make ignores it.
2059 test "$program_suffix" != NONE &&
2060 program_transform_name="s&\$&$program_suffix&;$program_transform_name"
2061 # Double any \ or $. echo might interpret backslashes.
2062 # By default was `s,x,x', remove it if useless.
2063 cat <<\_ACEOF >conftest.sed
2064 s/[\\$]/&&/g;s/;s,x,x,$//
2065 _ACEOF
2066 program_transform_name=`echo $program_transform_name | sed -f conftest.sed`
2067 rm -f conftest.sed
2068
2069 # expand $ac_aux_dir to an absolute path
2070 am_aux_dir=`cd $ac_aux_dir && pwd`
2071
2072 test x"${MISSING+set}" = xset || MISSING="\${SHELL} $am_aux_dir/missing"
2073 # Use eval to expand $SHELL
2074 if eval "$MISSING --run true"; then
2075 am_missing_run="$MISSING --run "
2076 else
2077 am_missing_run=
2078 { echo "$as_me:$LINENO: WARNING: \`missing' script is too old or missing" >&5
2079 echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;}
2080 fi
2081
2082 if mkdir -p --version . >/dev/null 2>&1 && test ! -d ./--version; then
2083 # We used to keeping the `.' as first argument, in order to
2084 # allow $(mkdir_p) to be used without argument. As in
2085 # $(mkdir_p) $(somedir)
2086 # where $(somedir) is conditionally defined. However this is wrong
2087 # for two reasons:
2088 # 1. if the package is installed by a user who cannot write `.'
2089 # make install will fail,
2090 # 2. the above comment should most certainly read
2091 # $(mkdir_p) $(DESTDIR)$(somedir)
2092 # so it does not work when $(somedir) is undefined and
2093 # $(DESTDIR) is not.
2094 # To support the latter case, we have to write
2095 # test -z "$(somedir)" || $(mkdir_p) $(DESTDIR)$(somedir),
2096 # so the `.' trick is pointless.
2097 mkdir_p='mkdir -p --'
2098 else
2099 # On NextStep and OpenStep, the `mkdir' command does not
2100 # recognize any option. It will interpret all options as
2101 # directories to create, and then abort because `.' already
2102 # exists.
2103 for d in ./-p ./--version;
2104 do
2105 test -d $d && rmdir $d
2106 done
2107 # $(mkinstalldirs) is defined by Automake if mkinstalldirs exists.
2108 if test -f "$ac_aux_dir/mkinstalldirs"; then
2109 mkdir_p='$(mkinstalldirs)'
2110 else
2111 mkdir_p='$(install_sh) -d'
2112 fi
2113 fi
2114
2115 for ac_prog in gawk mawk nawk awk
2116 do
2117 # Extract the first word of "$ac_prog", so it can be a program name with args.
2118 set dummy $ac_prog; ac_word=$2
2119 { echo "$as_me:$LINENO: checking for $ac_word" >&5
2120 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
2121 if test "${ac_cv_prog_AWK+set}" = set; then
2122 echo $ECHO_N "(cached) $ECHO_C" >&6
2123 else
2124 if test -n "$AWK"; then
2125 ac_cv_prog_AWK="$AWK" # Let the user override the test.
2126 else
2127 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
2128 for as_dir in $PATH
2129 do
2130 IFS=$as_save_IFS
2131 test -z "$as_dir" && as_dir=.
2132 for ac_exec_ext in '' $ac_executable_extensions; do
2133 if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
2134 ac_cv_prog_AWK="$ac_prog"
2135 echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
2136 break 2
2137 fi
2138 done
2139 done
2140 IFS=$as_save_IFS
2141
2142 fi
2143 fi
2144 AWK=$ac_cv_prog_AWK
2145 if test -n "$AWK"; then
2146 { echo "$as_me:$LINENO: result: $AWK" >&5
2147 echo "${ECHO_T}$AWK" >&6; }
2148 else
2149 { echo "$as_me:$LINENO: result: no" >&5
2150 echo "${ECHO_T}no" >&6; }
2151 fi
2152
2153
2154 test -n "$AWK" && break
2155 done
2156
2157 { echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
2158 echo $ECHO_N "checking whether ${MAKE-make} sets \$(MAKE)... $ECHO_C" >&6; }
2159 set x ${MAKE-make}; ac_make=`echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
2160 if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
2161 echo $ECHO_N "(cached) $ECHO_C" >&6
2162 else
2163 cat >conftest.make <<\_ACEOF
2164 SHELL = /bin/sh
2165 all:
2166 @echo '@@@%%%=$(MAKE)=@@@%%%'
2167 _ACEOF
2168 # GNU make sometimes prints "make[1]: Entering...", which would confuse us.
2169 case `${MAKE-make} -f conftest.make 2>/dev/null` in
2170 *@@@%%%=?*=@@@%%%*)
2171 eval ac_cv_prog_make_${ac_make}_set=yes;;
2172 *)
2173 eval ac_cv_prog_make_${ac_make}_set=no;;
2174 esac
2175 rm -f conftest.make
2176 fi
2177 if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then
2178 { echo "$as_me:$LINENO: result: yes" >&5
2179 echo "${ECHO_T}yes" >&6; }
2180 SET_MAKE=
2181 else
2182 { echo "$as_me:$LINENO: result: no" >&5
2183 echo "${ECHO_T}no" >&6; }
2184 SET_MAKE="MAKE=${MAKE-make}"
2185 fi
2186
2187 rm -rf .tst 2>/dev/null
2188 mkdir .tst 2>/dev/null
2189 if test -d .tst; then
2190 am__leading_dot=.
2191 else
2192 am__leading_dot=_
2193 fi
2194 rmdir .tst 2>/dev/null
2195
2196 # test to see if srcdir already configured
2197 if test "`cd $srcdir && pwd`" != "`pwd`" &&
2198 test -f $srcdir/config.status; then
2199 { { echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
2200 echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;}
2201 { (exit 1); exit 1; }; }
2202 fi
2203
2204 # test whether we have cygpath
2205 if test -z "$CYGPATH_W"; then
2206 if (cygpath --version) >/dev/null 2>/dev/null; then
2207 CYGPATH_W='cygpath -w'
2208 else
2209 CYGPATH_W=echo
2210 fi
2211 fi
2212
2213
2214 # Define the identity of the package.
2215 PACKAGE=PDB2PQR
2216 VERSION=1.3.0
2217
2218
2219 cat >>confdefs.h <<_ACEOF
2220 #define PACKAGE "$PACKAGE"
2221 _ACEOF
2222
2223
2224 cat >>confdefs.h <<_ACEOF
2225 #define VERSION "$VERSION"
2226 _ACEOF
2227
2228 # Some tools Automake needs.
2229
2230 ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"}
2231
2232
2233 AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"}
2234
2235
2236 AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"}
2237
2238
2239 AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"}
2240
2241
2242 MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"}
2243
2244 install_sh=${install_sh-"$am_aux_dir/install-sh"}
2245
2246 # Installed binaries are usually stripped using `strip' when the user
2247 # run `make install-strip'. However `strip' might not be the right
2248 # tool to use in cross-compilation environments, therefore Automake
2249 # will honor the `STRIP' environment variable to overrule this program.
2250 if test "$cross_compiling" != no; then
2251 if test -n "$ac_tool_prefix"; then
2252 # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.
2253 set dummy ${ac_tool_prefix}strip; ac_word=$2
2254 { echo "$as_me:$LINENO: checking for $ac_word" >&5
2255 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
2256 if test "${ac_cv_prog_STRIP+set}" = set; then
2257 echo $ECHO_N "(cached) $ECHO_C" >&6
2258 else
2259 if test -n "$STRIP"; then
2260 ac_cv_prog_STRIP="$STRIP" # Let the user override the test.
2261 else
2262 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
2263 for as_dir in $PATH
2264 do
2265 IFS=$as_save_IFS
2266 test -z "$as_dir" && as_dir=.
2267 for ac_exec_ext in '' $ac_executable_extensions; do
2268 if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
2269 ac_cv_prog_STRIP="${ac_tool_prefix}strip"
2270 echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
2271 break 2
2272 fi
2273 done
2274 done
2275 IFS=$as_save_IFS
2276
2277 fi
2278 fi
2279 STRIP=$ac_cv_prog_STRIP
2280 if test -n "$STRIP"; then
2281 { echo "$as_me:$LINENO: result: $STRIP" >&5
2282 echo "${ECHO_T}$STRIP" >&6; }
2283 else
2284 { echo "$as_me:$LINENO: result: no" >&5
2285 echo "${ECHO_T}no" >&6; }
2286 fi
2287
2288
2289 fi
2290 if test -z "$ac_cv_prog_STRIP"; then
2291 ac_ct_STRIP=$STRIP
2292 # Extract the first word of "strip", so it can be a program name with args.
2293 set dummy strip; ac_word=$2
2294 { echo "$as_me:$LINENO: checking for $ac_word" >&5
2295 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
2296 if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then
2297 echo $ECHO_N "(cached) $ECHO_C" >&6
2298 else
2299 if test -n "$ac_ct_STRIP"; then
2300 ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test.
2301 else
2302 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
2303 for as_dir in $PATH
2304 do
2305 IFS=$as_save_IFS
2306 test -z "$as_dir" && as_dir=.
2307 for ac_exec_ext in '' $ac_executable_extensions; do
2308 if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
2309 ac_cv_prog_ac_ct_STRIP="strip"
2310 echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
2311 break 2
2312 fi
2313 done
2314 done
2315 IFS=$as_save_IFS
2316
2317 fi
2318 fi
2319 ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP
2320 if test -n "$ac_ct_STRIP"; then
2321 { echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5
2322 echo "${ECHO_T}$ac_ct_STRIP" >&6; }
2323 else
2324 { echo "$as_me:$LINENO: result: no" >&5
2325 echo "${ECHO_T}no" >&6; }
2326 fi
2327
2328 if test "x$ac_ct_STRIP" = x; then
2329 STRIP=":"
2330 else
2331 case $cross_compiling:$ac_tool_warned in
2332 yes:)
2333 { echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
2334 whose name does not start with the host triplet. If you think this
2335 configuration is useful to you, please write to autoconf@gnu.org." >&5
2336 echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
2337 whose name does not start with the host triplet. If you think this
2338 configuration is useful to you, please write to autoconf@gnu.org." >&2;}
2339 ac_tool_warned=yes ;;
2340 esac
2341 STRIP=$ac_ct_STRIP
2342 fi
2343 else
2344 STRIP="$ac_cv_prog_STRIP"
2345 fi
2346
2347 fi
2348 INSTALL_STRIP_PROGRAM="\${SHELL} \$(install_sh) -c -s"
2349
2350 # We need awk for the "check" target. The system "awk" is bad on
2351 # some platforms.
2352 # Always define AMTAR for backward compatibility.
2353
2354 AMTAR=${AMTAR-"${am_missing_run}tar"}
2355
2356 am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -'
2357
2358
2359
2360
2361
2362 PDB2PQR_VERSION="1:3:0"
2363
2364 ACLOCAL=":";
2365 AUTOCONF=":";
2366 AUTOMAKE=":";
2367 AUTOHEADER=":";
2368
2369
2370
2371
2372 ac_ext=cpp
2373 ac_cpp='$CXXCPP $CPPFLAGS'
2374 ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
2375 ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
2376 ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
2377 if test -z "$CXX"; then
2378 if test -n "$CCC"; then
2379 CXX=$CCC
2380 else
2381 if test -n "$ac_tool_prefix"; then
2382 for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
2383 do
2384 # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
2385 set dummy $ac_tool_prefix$ac_prog; ac_word=$2
2386 { echo "$as_me:$LINENO: checking for $ac_word" >&5
2387 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
2388 if test "${ac_cv_prog_CXX+set}" = set; then
2389 echo $ECHO_N "(cached) $ECHO_C" >&6
2390 else
2391 if test -n "$CXX"; then
2392 ac_cv_prog_CXX="$CXX" # Let the user override the test.
2393 else
2394 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
2395 for as_dir in $PATH
2396 do
2397 IFS=$as_save_IFS
2398 test -z "$as_dir" && as_dir=.
2399 for ac_exec_ext in '' $ac_executable_extensions; do
2400 if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
2401 ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
2402 echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
2403 break 2
2404 fi
2405 done
2406 done
2407 IFS=$as_save_IFS
2408
2409 fi
2410 fi
2411 CXX=$ac_cv_prog_CXX
2412 if test -n "$CXX"; then
2413 { echo "$as_me:$LINENO: result: $CXX" >&5
2414 echo "${ECHO_T}$CXX" >&6; }
2415 else
2416 { echo "$as_me:$LINENO: result: no" >&5
2417 echo "${ECHO_T}no" >&6; }
2418 fi
2419
2420
2421 test -n "$CXX" && break
2422 done
2423 fi
2424 if test -z "$CXX"; then
2425 ac_ct_CXX=$CXX
2426 for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
2427 do
2428 # Extract the first word of "$ac_prog", so it can be a program name with args.
2429 set dummy $ac_prog; ac_word=$2
2430 { echo "$as_me:$LINENO: checking for $ac_word" >&5
2431 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
2432 if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
2433 echo $ECHO_N "(cached) $ECHO_C" >&6
2434 else
2435 if test -n "$ac_ct_CXX"; then
2436 ac_cv_prog_ac_ct_CXX="$ac_ct_CXX" # Let the user override the test.
2437 else
2438 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
2439 for as_dir in $PATH
2440 do
2441 IFS=$as_save_IFS
2442 test -z "$as_dir" && as_dir=.
2443 for ac_exec_ext in '' $ac_executable_extensions; do
2444 if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
2445 ac_cv_prog_ac_ct_CXX="$ac_prog"
2446 echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
2447 break 2
2448 fi
2449 done
2450 done
2451 IFS=$as_save_IFS
2452
2453 fi
2454 fi
2455 ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
2456 if test -n "$ac_ct_CXX"; then
2457 { echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
2458 echo "${ECHO_T}$ac_ct_CXX" >&6; }
2459 else
2460 { echo "$as_me:$LINENO: result: no" >&5
2461 echo "${ECHO_T}no" >&6; }
2462 fi
2463
2464
2465 test -n "$ac_ct_CXX" && break
2466 done
2467
2468 if test "x$ac_ct_CXX" = x; then
2469 CXX="g++"
2470 else
2471 case $cross_compiling:$ac_tool_warned in
2472 yes:)
2473 { echo "$as_me:$LINENO: WARNING: In the future, Autoconf will not detect cross-tools
2474 whose name does not start with the host triplet. If you think this
2475 configuration is useful to you, please write to autoconf@gnu.org." >&5
2476 echo "$as_me: WARNING: In the future, Autoconf will not detect cross-tools
2477 whose name does not start with the host triplet. If you think this
2478 configuration is useful to you, please write to autoconf@gnu.org." >&2;}
2479 ac_tool_warned=yes ;;
2480 esac
2481 CXX=$ac_ct_CXX
2482 fi
2483 fi
2484
2485 fi
2486 fi
2487 # Provide some information about the compiler.
2488 echo "$as_me:$LINENO: checking for C++ compiler version" >&5
2489 ac_compiler=`set X $ac_compile; echo $2`
2490 { (ac_try="$ac_compiler --version >&5"
2491 case "(($ac_try" in
2492 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2493 *) ac_try_echo=$ac_try;;
2494 esac
2495 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2496 (eval "$ac_compiler --version >&5") 2>&5
2497 ac_status=$?
2498 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2499 (exit $ac_status); }
2500 { (ac_try="$ac_compiler -v >&5"
2501 case "(($ac_try" in
2502 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2503 *) ac_try_echo=$ac_try;;
2504 esac
2505 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2506 (eval "$ac_compiler -v >&5") 2>&5
2507 ac_status=$?
2508 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2509 (exit $ac_status); }
2510 { (ac_try="$ac_compiler -V >&5"
2511 case "(($ac_try" in
2512 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2513 *) ac_try_echo=$ac_try;;
2514 esac
2515 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2516 (eval "$ac_compiler -V >&5") 2>&5
2517 ac_status=$?
2518 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2519 (exit $ac_status); }
2520
2521 cat >conftest.$ac_ext <<_ACEOF
2522 /* confdefs.h. */
2523 _ACEOF
2524 cat confdefs.h >>conftest.$ac_ext
2525 cat >>conftest.$ac_ext <<_ACEOF
2526 /* end confdefs.h. */
2527
2528 int
2529 main ()
2530 {
2531
2532 ;
2533 return 0;
2534 }
2535 _ACEOF
2536 ac_clean_files_save=$ac_clean_files
2537 ac_clean_files="$ac_clean_files a.out a.exe b.out"
2538 # Try to create an executable without -o first, disregard a.out.
2539 # It will help us diagnose broken compilers, and finding out an intuition
2540 # of exeext.
2541 { echo "$as_me:$LINENO: checking for C++ compiler default output file name" >&5
2542 echo $ECHO_N "checking for C++ compiler default output file name... $ECHO_C" >&6; }
2543 ac_link_default=`echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
2544 #
2545 # List of possible output files, starting from the most likely.
2546 # The algorithm is not robust to junk in `.', hence go to wildcards (a.*)
2547 # only as a last resort. b.out is created by i960 compilers.
2548 ac_files='a_out.exe a.exe conftest.exe a.out conftest a.* conftest.* b.out'
2549 #
2550 # The IRIX 6 linker writes into existing files which may not be
2551 # executable, retaining their permissions. Remove them first so a
2552 # subsequent execution test works.
2553 ac_rmfiles=
2554 for ac_file in $ac_files
2555 do
2556 case $ac_file in
2557 *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
2558 * ) ac_rmfiles="$ac_rmfiles $ac_file";;
2559 esac
2560 done
2561 rm -f $ac_rmfiles
2562
2563 if { (ac_try="$ac_link_default"
2564 case "(($ac_try" in
2565 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2566 *) ac_try_echo=$ac_try;;
2567 esac
2568 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2569 (eval "$ac_link_default") 2>&5
2570 ac_status=$?
2571 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2572 (exit $ac_status); }; then
2573 # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
2574 # So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
2575 # in a Makefile. We should not override ac_cv_exeext if it was cached,
2576 # so that the user can short-circuit this test for compilers unknown to
2577 # Autoconf.
2578 for ac_file in $ac_files
2579 do
2580 test -f "$ac_file" || continue
2581 case $ac_file in
2582 *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj )
2583 ;;
2584 [ab].out )
2585 # We found the default executable, but exeext='' is most
2586 # certainly right.
2587 break;;
2588 *.* )
2589 if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
2590 then :; else
2591 ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
2592 fi
2593 # We set ac_cv_exeext here because the later test for it is not
2594 # safe: cross compilers may not add the suffix if given an `-o'
2595 # argument, so we may need to know it at that point already.
2596 # Even if this section looks crufty: it has the advantage of
2597 # actually working.
2598 break;;
2599 * )
2600 break;;
2601 esac
2602 done
2603 test "$ac_cv_exeext" = no && ac_cv_exeext=
2604
2605 else
2606 echo "$as_me: failed program was:" >&5
2607 sed 's/^/| /' conftest.$ac_ext >&5
2608
2609 { { echo "$as_me:$LINENO: error: C++ compiler cannot create executables
2610 See \`config.log' for more details." >&5
2611 echo "$as_me: error: C++ compiler cannot create executables
2612 See \`config.log' for more details." >&2;}
2613 { (exit 77); exit 77; }; }
2614 fi
2615
2616 ac_exeext=$ac_cv_exeext
2617 { echo "$as_me:$LINENO: result: $ac_file" >&5
2618 echo "${ECHO_T}$ac_file" >&6; }
2619
2620 # Check that the compiler produces executables we can run. If not, either
2621 # the compiler is broken, or we cross compile.
2622 { echo "$as_me:$LINENO: checking whether the C++ compiler works" >&5
2623 echo $ECHO_N "checking whether the C++ compiler works... $ECHO_C" >&6; }
2624 # FIXME: These cross compiler hacks should be removed for Autoconf 3.0
2625 # If not cross compiling, check that we can run a simple program.
2626 if test "$cross_compiling" != yes; then
2627 if { ac_try='./$ac_file'
2628 { (case "(($ac_try" in
2629 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2630 *) ac_try_echo=$ac_try;;
2631 esac
2632 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2633 (eval "$ac_try") 2>&5
2634 ac_status=$?
2635 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2636 (exit $ac_status); }; }; then
2637 cross_compiling=no
2638 else
2639 if test "$cross_compiling" = maybe; then
2640 cross_compiling=yes
2641 else
2642 { { echo "$as_me:$LINENO: error: cannot run C++ compiled programs.
2643 If you meant to cross compile, use \`--host'.
2644 See \`config.log' for more details." >&5
2645 echo "$as_me: error: cannot run C++ compiled programs.
2646 If you meant to cross compile, use \`--host'.
2647 See \`config.log' for more details." >&2;}
2648 { (exit 1); exit 1; }; }
2649 fi
2650 fi
2651 fi
2652 { echo "$as_me:$LINENO: result: yes" >&5
2653 echo "${ECHO_T}yes" >&6; }
2654
2655 rm -f a.out a.exe conftest$ac_cv_exeext b.out
2656 ac_clean_files=$ac_clean_files_save
2657 # Check that the compiler produces executables we can run. If not, either
2658 # the compiler is broken, or we cross compile.
2659 { echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
2660 echo $ECHO_N "checking whether we are cross compiling... $ECHO_C" >&6; }
2661 { echo "$as_me:$LINENO: result: $cross_compiling" >&5
2662 echo "${ECHO_T}$cross_compiling" >&6; }
2663
2664 { echo "$as_me:$LINENO: checking for suffix of executables" >&5
2665 echo $ECHO_N "checking for suffix of executables... $ECHO_C" >&6; }
2666 if { (ac_try="$ac_link"
2667 case "(($ac_try" in
2668 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2669 *) ac_try_echo=$ac_try;;
2670 esac
2671 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2672 (eval "$ac_link") 2>&5
2673 ac_status=$?
2674 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2675 (exit $ac_status); }; then
2676 # If both `conftest.exe' and `conftest' are `present' (well, observable)
2677 # catch `conftest.exe'. For instance with Cygwin, `ls conftest' will
2678 # work properly (i.e., refer to `conftest.exe'), while it won't with
2679 # `rm'.
2680 for ac_file in conftest.exe conftest conftest.*; do
2681 test -f "$ac_file" || continue
2682 case $ac_file in
2683 *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.o | *.obj ) ;;
2684 *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
2685 break;;
2686 * ) break;;
2687 esac
2688 done
2689 else
2690 { { echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link
2691 See \`config.log' for more details." >&5
2692 echo "$as_me: error: cannot compute suffix of executables: cannot compile and link
2693 See \`config.log' for more details." >&2;}
2694 { (exit 1); exit 1; }; }
2695 fi
2696
2697 rm -f conftest$ac_cv_exeext
2698 { echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
2699 echo "${ECHO_T}$ac_cv_exeext" >&6; }
2700
2701 rm -f conftest.$ac_ext
2702 EXEEXT=$ac_cv_exeext
2703 ac_exeext=$EXEEXT
2704 { echo "$as_me:$LINENO: checking for suffix of object files" >&5
2705 echo $ECHO_N "checking for suffix of object files... $ECHO_C" >&6; }
2706 if test "${ac_cv_objext+set}" = set; then
2707 echo $ECHO_N "(cached) $ECHO_C" >&6
2708 else
2709 cat >conftest.$ac_ext <<_ACEOF
2710 /* confdefs.h. */
2711 _ACEOF
2712 cat confdefs.h >>conftest.$ac_ext
2713 cat >>conftest.$ac_ext <<_ACEOF
2714 /* end confdefs.h. */
2715
2716 int
2717 main ()
2718 {
2719
2720 ;
2721 return 0;
2722 }
2723 _ACEOF
2724 rm -f conftest.o conftest.obj
2725 if { (ac_try="$ac_compile"
2726 case "(($ac_try" in
2727 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2728 *) ac_try_echo=$ac_try;;
2729 esac
2730 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2731 (eval "$ac_compile") 2>&5
2732 ac_status=$?
2733 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2734 (exit $ac_status); }; then
2735 for ac_file in conftest.o conftest.obj conftest.*; do
2736 test -f "$ac_file" || continue;
2737 case $ac_file in
2738 *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf ) ;;
2739 *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
2740 break;;
2741 esac
2742 done
2743 else
2744 echo "$as_me: failed program was:" >&5
2745 sed 's/^/| /' conftest.$ac_ext >&5
2746
2747 { { echo "$as_me:$LINENO: error: cannot compute suffix of object files: cannot compile
2748 See \`config.log' for more details." >&5
2749 echo "$as_me: error: cannot compute suffix of object files: cannot compile
2750 See \`config.log' for more details." >&2;}
2751 { (exit 1); exit 1; }; }
2752 fi
2753
2754 rm -f conftest.$ac_cv_objext conftest.$ac_ext
2755 fi
2756 { echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
2757 echo "${ECHO_T}$ac_cv_objext" >&6; }
2758 OBJEXT=$ac_cv_objext
2759 ac_objext=$OBJEXT
2760 { echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
2761 echo $ECHO_N "checking whether we are using the GNU C++ compiler... $ECHO_C" >&6; }
2762 if test "${ac_cv_cxx_compiler_gnu+set}" = set; then
2763 echo $ECHO_N "(cached) $ECHO_C" >&6
2764 else
2765 cat >conftest.$ac_ext <<_ACEOF
2766 /* confdefs.h. */
2767 _ACEOF
2768 cat confdefs.h >>conftest.$ac_ext
2769 cat >>conftest.$ac_ext <<_ACEOF
2770 /* end confdefs.h. */
2771
2772 int
2773 main ()
2774 {
2775 #ifndef __GNUC__
2776 choke me
2777 #endif
2778
2779 ;
2780 return 0;
2781 }
2782 _ACEOF
2783 rm -f conftest.$ac_objext
2784 if { (ac_try="$ac_compile"
2785 case "(($ac_try" in
2786 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2787 *) ac_try_echo=$ac_try;;
2788 esac
2789 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2790 (eval "$ac_compile") 2>conftest.er1
2791 ac_status=$?
2792 grep -v '^ *+' conftest.er1 >conftest.err
2793 rm -f conftest.er1
2794 cat conftest.err >&5
2795 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2796 (exit $ac_status); } &&
2797 { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
2798 { (case "(($ac_try" in
2799 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2800 *) ac_try_echo=$ac_try;;
2801 esac
2802 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2803 (eval "$ac_try") 2>&5
2804 ac_status=$?
2805 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2806 (exit $ac_status); }; } &&
2807 { ac_try='test -s conftest.$ac_objext'
2808 { (case "(($ac_try" in
2809 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2810 *) ac_try_echo=$ac_try;;
2811 esac
2812 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2813 (eval "$ac_try") 2>&5
2814 ac_status=$?
2815 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2816 (exit $ac_status); }; }; then
2817 ac_compiler_gnu=yes
2818 else
2819 echo "$as_me: failed program was:" >&5
2820 sed 's/^/| /' conftest.$ac_ext >&5
2821
2822 ac_compiler_gnu=no
2823 fi
2824
2825 rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
2826 ac_cv_cxx_compiler_gnu=$ac_compiler_gnu
2827
2828 fi
2829 { echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
2830 echo "${ECHO_T}$ac_cv_cxx_compiler_gnu" >&6; }
2831 GXX=`test $ac_compiler_gnu = yes && echo yes`
2832 ac_test_CXXFLAGS=${CXXFLAGS+set}
2833 ac_save_CXXFLAGS=$CXXFLAGS
2834 { echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
2835 echo $ECHO_N "checking whether $CXX accepts -g... $ECHO_C" >&6; }
2836 if test "${ac_cv_prog_cxx_g+set}" = set; then
2837 echo $ECHO_N "(cached) $ECHO_C" >&6
2838 else
2839 ac_save_cxx_werror_flag=$ac_cxx_werror_flag
2840 ac_cxx_werror_flag=yes
2841 ac_cv_prog_cxx_g=no
2842 CXXFLAGS="-g"
2843 cat >conftest.$ac_ext <<_ACEOF
2844 /* confdefs.h. */
2845 _ACEOF
2846 cat confdefs.h >>conftest.$ac_ext
2847 cat >>conftest.$ac_ext <<_ACEOF
2848 /* end confdefs.h. */
2849
2850 int
2851 main ()
2852 {
2853
2854 ;
2855 return 0;
2856 }
2857 _ACEOF
2858 rm -f conftest.$ac_objext
2859 if { (ac_try="$ac_compile"
2860 case "(($ac_try" in
2861 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2862 *) ac_try_echo=$ac_try;;
2863 esac
2864 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2865 (eval "$ac_compile") 2>conftest.er1
2866 ac_status=$?
2867 grep -v '^ *+' conftest.er1 >conftest.err
2868 rm -f conftest.er1
2869 cat conftest.err >&5
2870 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2871 (exit $ac_status); } &&
2872 { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
2873 { (case "(($ac_try" in
2874 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2875 *) ac_try_echo=$ac_try;;
2876 esac
2877 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2878 (eval "$ac_try") 2>&5
2879 ac_status=$?
2880 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2881 (exit $ac_status); }; } &&
2882 { ac_try='test -s conftest.$ac_objext'
2883 { (case "(($ac_try" in
2884 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2885 *) ac_try_echo=$ac_try;;
2886 esac
2887 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2888 (eval "$ac_try") 2>&5
2889 ac_status=$?
2890 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2891 (exit $ac_status); }; }; then
2892 ac_cv_prog_cxx_g=yes
2893 else
2894 echo "$as_me: failed program was:" >&5
2895 sed 's/^/| /' conftest.$ac_ext >&5
2896
2897 CXXFLAGS=""
2898 cat >conftest.$ac_ext <<_ACEOF
2899 /* confdefs.h. */
2900 _ACEOF
2901 cat confdefs.h >>conftest.$ac_ext
2902 cat >>conftest.$ac_ext <<_ACEOF
2903 /* end confdefs.h. */
2904
2905 int
2906 main ()
2907 {
2908
2909 ;
2910 return 0;
2911 }
2912 _ACEOF
2913 rm -f conftest.$ac_objext
2914 if { (ac_try="$ac_compile"
2915 case "(($ac_try" in
2916 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2917 *) ac_try_echo=$ac_try;;
2918 esac
2919 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2920 (eval "$ac_compile") 2>conftest.er1
2921 ac_status=$?
2922 grep -v '^ *+' conftest.er1 >conftest.err
2923 rm -f conftest.er1
2924 cat conftest.err >&5
2925 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2926 (exit $ac_status); } &&
2927 { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
2928 { (case "(($ac_try" in
2929 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2930 *) ac_try_echo=$ac_try;;
2931 esac
2932 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2933 (eval "$ac_try") 2>&5
2934 ac_status=$?
2935 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2936 (exit $ac_status); }; } &&
2937 { ac_try='test -s conftest.$ac_objext'
2938 { (case "(($ac_try" in
2939 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2940 *) ac_try_echo=$ac_try;;
2941 esac
2942 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2943 (eval "$ac_try") 2>&5
2944 ac_status=$?
2945 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2946 (exit $ac_status); }; }; then
2947 :
2948 else
2949 echo "$as_me: failed program was:" >&5
2950 sed 's/^/| /' conftest.$ac_ext >&5
2951
2952 ac_cxx_werror_flag=$ac_save_cxx_werror_flag
2953 CXXFLAGS="-g"
2954 cat >conftest.$ac_ext <<_ACEOF
2955 /* confdefs.h. */
2956 _ACEOF
2957 cat confdefs.h >>conftest.$ac_ext
2958 cat >>conftest.$ac_ext <<_ACEOF
2959 /* end confdefs.h. */
2960
2961 int
2962 main ()
2963 {
2964
2965 ;
2966 return 0;
2967 }
2968 _ACEOF
2969 rm -f conftest.$ac_objext
2970 if { (ac_try="$ac_compile"
2971 case "(($ac_try" in
2972 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2973 *) ac_try_echo=$ac_try;;
2974 esac
2975 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2976 (eval "$ac_compile") 2>conftest.er1
2977 ac_status=$?
2978 grep -v '^ *+' conftest.er1 >conftest.err
2979 rm -f conftest.er1
2980 cat conftest.err >&5
2981 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2982 (exit $ac_status); } &&
2983 { ac_try='test -z "$ac_cxx_werror_flag" || test ! -s conftest.err'
2984 { (case "(($ac_try" in
2985 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2986 *) ac_try_echo=$ac_try;;
2987 esac
2988 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2989 (eval "$ac_try") 2>&5
2990 ac_status=$?
2991 echo "$as_me:$LINENO: \$? = $ac_status" >&5
2992 (exit $ac_status); }; } &&
2993 { ac_try='test -s conftest.$ac_objext'
2994 { (case "(($ac_try" in
2995 *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
2996 *) ac_try_echo=$ac_try;;
2997 esac
2998 eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
2999 (eval "$ac_try") 2>&5
3000 ac_status=$?
3001 echo "$as_me:$LINENO: \$? = $ac_status" >&5
3002 (exit $ac_status); }; }; then
3003 ac_cv_prog_cxx_g=yes
3004 else
3005 echo "$as_me: failed program was:" >&5
3006 sed 's/^/| /' conftest.$ac_ext >&5
3007
3008
3009 fi
3010
3011 rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
3012 fi
3013
3014 rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
3015 fi
3016
3017 rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
3018 ac_cxx_werror_flag=$ac_save_cxx_werror_flag
3019 fi
3020 { echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
3021 echo "${ECHO_T}$ac_cv_prog_cxx_g" >&6; }
3022 if test "$ac_test_CXXFLAGS" = set; then
3023 CXXFLAGS=$ac_save_CXXFLAGS
3024 elif test $ac_cv_prog_cxx_g = yes; then
3025 if test "$GXX" = yes; then
3026 CXXFLAGS="-g -O2"
3027 else
3028 CXXFLAGS="-g"
3029 fi
3030 else
3031 if test "$GXX" = yes; then
3032 CXXFLAGS="-O2"
3033 else
3034 CXXFLAGS=
3035 fi
3036 fi
3037 ac_ext=c
3038 ac_cpp='$CPP $CPPFLAGS'
3039 ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
3040 ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
3041 ac_compiler_gnu=$ac_cv_c_compiler_gnu
3042 DEPDIR="${am__leading_dot}deps"
3043
3044 ac_config_commands="$ac_config_commands depfiles"
3045
3046
3047 am_make=${MAKE-make}
3048 cat > confinc << 'END'
3049 am__doit:
3050 @echo done
3051 .PHONY: am__doit
3052 END
3053 # If we don't find an include directive, just comment out the code.
3054 { echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5
3055 echo $ECHO_N "checking for style of include used by $am_make... $ECHO_C" >&6; }
3056 am__include="#"
3057 am__quote=
3058 _am_result=none
3059 # First try GNU make style include.
3060 echo "include confinc" > confmf
3061 # We grep out `Entering directory' and `Leaving directory'
3062 # messages which can occur if `w' ends up in MAKEFLAGS.
3063 # In particular we don't look at `^make:' because GNU make might
3064 # be invoked under some other name (usually "gmake"), in which
3065 # case it prints its new name instead of `make'.
3066 if test "`$am_make -s -f confmf 2> /dev/null | grep -v 'ing directory'`" = "done"; then
3067 am__include=include
3068 am__quote=
3069 _am_result=GNU
3070 fi
3071 # Now try BSD make style include.
3072 if test "$am__include" = "#"; then
3073 echo '.include "confinc"' > confmf
3074 if test "`$am_make -s -f confmf 2> /dev/null`" = "done"; then
3075 am__include=.include
3076 am__quote="\""
3077 _am_result=BSD
3078 fi
3079 fi
3080
3081
3082 { echo "$as_me:$LINENO: result: $_am_result" >&5
3083 echo "${ECHO_T}$_am_result" >&6; }
3084 rm -f confinc confmf
3085
3086 # Check whether --enable-dependency-tracking was given.
3087 if test "${enable_dependency_tracking+set}" = set; then
3088 enableval=$enable_dependency_tracking;
3089 fi
3090
3091 if test "x$enable_dependency_tracking" != xno; then
3092 am_depcomp="$ac_aux_dir/depcomp"
3093 AMDEPBACKSLASH='\'
3094 fi
3095
3096
3097 if test "x$enable_dependency_tracking" != xno; then
3098 AMDEP_TRUE=
3099 AMDEP_FALSE='#'
3100 else
3101 AMDEP_TRUE='#'
3102 AMDEP_FALSE=
3103 fi
3104
3105
3106
3107
3108 depcc="$CXX" am_compiler_list=
3109
3110 { echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
3111 echo $ECHO_N "checking dependency style of $depcc... $ECHO_C" >&6; }
3112 if test "${am_cv_CXX_dependencies_compiler_type+set}" = set; then
3113 echo $ECHO_N "(cached) $ECHO_C" >&6
3114 else
3115 if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
3116 # We make a subdir and do the tests there. Otherwise we can end up
3117 # making bogus files that we don't know about and never remove. For
3118 # instance it was reported that on HP-UX the gcc test will end up
3119 # making a dummy file named `D' -- because `-MD' means `put the output
3120 # in D'.
3121 mkdir conftest.dir
3122 # Copy depcomp to subdir because otherwise we won't find it if we're
3123 # using a relative directory.
3124 cp "$am_depcomp" conftest.dir
3125 cd conftest.dir
3126 # We will build objects and dependencies in a subdirectory because
3127 # it helps to detect inapplicable dependency modes. For instance
3128 # both Tru64's cc and ICC support -MD to output dependencies as a
3129 # side effect of compilation, but ICC will put the dependencies in
3130 # the current directory while Tru64 will put them in the object
3131 # directory.
3132 mkdir sub
3133
3134 am_cv_CXX_dependencies_compiler_type=none
3135 if test "$am_compiler_list" = ""; then
3136 am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
3137 fi
3138 for depmode in $am_compiler_list; do
3139 # Setup a source with many dependencies, because some compilers
3140 # like to wrap large dependency lists on column 80 (with \), and
3141 # we should not choose a depcomp mode which is confused by this.
3142 #
3143 # We need to recreate these files for each test, as the compiler may
3144 # overwrite some of them when testing with obscure command lines.
3145 # This happens at least with the AIX C compiler.
3146 : > sub/conftest.c
3147 for i in 1 2 3 4 5 6; do
3148 echo '#include "conftst'$i'.h"' >> sub/conftest.c
3149 # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with
3150 # Solaris 8's {/usr,}/bin/sh.
3151 touch sub/conftst$i.h
3152 done
3153 echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
3154
3155 case $depmode in
3156 nosideeffect)
3157 # after this tag, mechanisms are not by side-effect, so they'll
3158 # only be used when explicitly requested
3159 if test "x$enable_dependency_tracking" = xyes; then
3160 continue
3161 else
3162 break
3163 fi
3164 ;;
3165 none) break ;;
3166 esac
3167 # We check with `-c' and `-o' for the sake of the "dashmstdout"
3168 # mode. It turns out that the SunPro C++ compiler does not properly
3169 # handle `-M -o', and we need to detect this.
3170 if depmode=$depmode \
3171 source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \
3172 depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
3173 $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \
3174 >/dev/null 2>conftest.err &&
3175 grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
3176 grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 &&
3177 ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
3178 # icc doesn't choke on unknown options, it will just issue warnings
3179 # or remarks (even with -Werror). So we grep stderr for any message
3180 # that says an option was ignored or not supported.
3181 # When given -MP, icc 7.0 and 7.1 complain thusly:
3182 # icc: Command line warning: ignoring option '-M'; no argument required
3183 # The diagnosis changed in icc 8.0:
3184 # icc: Command line remark: option '-MP' not supported
3185 if (grep 'ignoring option' conftest.err ||
3186 grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else
3187 am_cv_CXX_dependencies_compiler_type=$depmode
3188 break
3189 fi
3190 fi
3191 done
3192
3193 cd ..
3194 rm -rf conftest.dir
3195 else
3196 am_cv_CXX_dependencies_compiler_type=none
3197 fi
3198
3199 fi
3200 { echo "$as_me:$LINENO: result: $am_cv_CXX_dependencies_compiler_type" >&5
3201 echo "${ECHO_T}$am_cv_CXX_dependencies_compiler_type" >&6; }
3202 CXXDEPMODE=depmode=$am_cv_CXX_dependencies_compiler_type
3203
3204
3205
3206 if
3207 test "x$enable_dependency_tracking" != xno \
3208 && test "$am_cv_CXX_dependencies_compiler_type" = gcc3; then
3209 am__fastdepCXX_TRUE=
3210 am__fastdepCXX_FALSE='#'
3211 else
3212 am__fastdepCXX_TRUE='#'
3213 am__fastdepCXX_FALSE=
3214 fi
3215
3216
3217
3218
3219
3220
3221 # Check whether --with-python was given.
3222 if test "${with_python+set}" = set; then
3223 withval=$with_python; PYTHONPATH=$withval
3224 else
3225 PYTHONPATH=""
3226 fi
3227
3228
3229 if test "$PYTHONPATH" = "" ; then
3230 # Extract the first word of "python", so it can be a program name with args.
3231 set dummy python; ac_word=$2
3232 { echo "$as_me:$LINENO: checking for $ac_word" >&5
3233 echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; }
3234 if test "${ac_cv_path_py_path+set}" = set; then
3235 echo $ECHO_N "(cached) $ECHO_C" >&6
3236 else
3237 case $py_path in
3238 [\\/]* | ?:[\\/]*)
3239 ac_cv_path_py_path="$py_path" # Let the user override the test with a path.
3240 ;;
3241 *)
3242 as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
3243 for as_dir in $PATH
3244 do
3245 IFS=$as_save_IFS
3246 test -z "$as_dir" && as_dir=.
3247 for ac_exec_ext in '' $ac_executable_extensions; do
3248 if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then
3249 ac_cv_path_py_path="$as_dir/$ac_word$ac_exec_ext"
3250 echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
3251 break 2
3252 fi
3253 done
3254 done
3255 IFS=$as_save_IFS
3256
3257 ;;
3258 esac
3259 fi
3260 py_path=$ac_cv_path_py_path
3261 if test -n "$py_path"; then
3262 { echo "$as_me:$LINENO: result: $py_path" >&5
3263 echo "${ECHO_T}$py_path" >&6; }
3264 else
3265 { echo "$as_me:$LINENO: result: no" >&5
3266 echo "${ECHO_T}no" >&6; }
3267 fi
3268
3269
3270 if test -z "${py_path}"; then
3271 { { echo "$as_me:$LINENO: error: Unable to find python! Python location can be specified with --with-python" >&5
3272 echo "$as_me: error: Unable to find python! Python location can be specified with --with-python" >&2;}
3273 { (exit 1); exit 1; }; }
3274 fi
3275 else
3276 py_path=$PYTHONPATH
3277 fi
3278
3279 srcpath=`pwd`
3280
3281 sed -e 's%@srcdir@%'${srcpath}'%' tests/test/test.cpp.in > tests/test/test.cpp
3282 sed -e 's%@srcdir@%'${srcpath}'%' tests/adv-test/test.cpp.in > tests/adv-test/test.cpp
3283 sed -e 's%@py_path@%'${py_path}'%' tests/test/test.sh.in > tests/test/test.sh.tmp.1
3284 sed -e 's%@py_path@%'${py_path}'%' tests/adv-test/test.sh.in > tests/adv-test/test.sh.tmp.1
3285 sed -e 's%@srcdir@%'${srcpath}'%' tests/test/test.sh.tmp.1 > tests/test/test.sh
3286 sed -e 's%@srcdir@%'${srcpath}'%' tests/adv-test/test.sh.tmp.1 > tests/adv-test/test.sh
3287 rm -f tests/test/test.sh.tmp.*
3288 rm -f tests/adv-test/test.sh.tmp.*
3289
3290 { echo "$as_me:$LINENO: checking for python include directory" >&5
3291 echo $ECHO_N "checking for python include directory... $ECHO_C" >&6; }
3292 PY_VERSION=`$py_path -c 'import sys; print sys.version[:3]'`
3293 PY_PREFIX=`$py_path -c 'import sys; print sys.prefix'`
3294 if test -f $PY_PREFIX/include/python$PY_VERSION/Python.h; then
3295 PY_HEADER="-I$PY_PREFIX/include/python$PY_VERSION"
3296 { echo "$as_me:$LINENO: result: $PY_HEADER" >&5
3297 echo "${ECHO_T}$PY_HEADER" >&6; }
3298 elif test -f $PY_PREFIX/include/Python.h; then
3299 PY_HEADER="-I$PY_PREFIX/include"
3300 { echo "$as_me:$LINENO: result: $PY_HEADER" >&5
3301 echo "${ECHO_T}$PY_HEADER" >&6; }
3302 else
3303 { { echo "$as_me:$LINENO: error: Unable to find Python.h!" >&5
3304 echo "$as_me: error: Unable to find Python.h!" >&2;}
3305 { (exit 1); exit 1; }; }
3306 fi
3307
3308
3309 PY_LDFLAGS=""
3310 PY_SHARED=""
3311 PY_FLAGS=""
3312 case $host_os in
3313 linux*)
3314 PY_SHARED="-shared";;
3315 irix*)
3316 PY_SHARED="-shared"
3317 PY_LDFLAGS="-lftn -lm";;
3318 sun|solaris**)
3319 PY_SHARED="-G"
3320 PY_LDFLAGS="-lF77 -lm -lM77 -lsunmath";;
3321 darwin*)
3322 PY_LDFLAGS="-Wl,-framework -Wl,Python -bundle";;
3323 esac
3324
3325 case $host_cpu in
3326 x86_64*)
3327 PY_FLAGS="-fPIC";;
3328 esac
3329
3330 PY_SHARED=$PY_SHARED
3331
3332 PY_LDFLAGS=$PY_LDFLAGS
3333
3334 PY_HEADER=$PY_HEADER
3335
3336 PY_FLAGS=$PY_FLAGS
3337
3338
3339
3340 PDB2PQR_SUBDIRS=""
3341
3342 # A. propka
3343
3344 { echo "$as_me:$LINENO: checking for --disable-propka" >&5
3345 echo $ECHO_N "checking for --disable-propka... $ECHO_C" >&6; }
3346 # Check whether --enable-propka was given.
3347 if test "${enable_propka+set}" = set; then
3348 enableval=$enable_propka; with_propka="$enableval"
3349 else
3350 with_propka="enable"
3351
3352 fi
3353
3354
3355 if test "$with_propka" = "yes" ; then
3356 with_propka="enable"
3357 elif test "$with_propka" = "no"; then
3358 with_propka="disable"
3359 fi
3360
3361 if test "${with_propka}" = "enable"; then
3362 PDB2PQR_SUBDIRS="propka"
3363 { echo "$as_me:$LINENO: result: no" >&5
3364 echo "${ECHO_T}no" >&6; }
3365 { echo "$as_me:$LINENO: result: " >&5
3366 echo "${ECHO_T}" >&6; }
3367 { echo "$as_me:$LINENO: result: ------------- Begin Processing PropKa Configure Options -----------" >&5
3368 echo "${ECHO_T}------------- Begin Processing PropKa Configure Options -----------" >&6; }
3369 cd propka
3370 ./configure py_path=$py_path
3371 cd ..
3372 { echo "$as_me:$LINENO: result: ------------- End Processing PropKa Configure Options -----------" >&5
3373 echo "${ECHO_T}------------- End Processing PropKa Configure Options -----------" >&6; }
3374 { echo "$as_me:$LINENO: result: " >&5
3375 echo "${ECHO_T}" >&6; }
3376 else
3377 { echo "$as_me:$LINENO: result: yes" >&5
3378 echo "${ECHO_T}yes" >&6; }
3379 PDB2PQR_SUBDIRS=""
3380 fi
3381
3382 # B. pdb2pka
3383
3384 { echo "$as_me:$LINENO: checking for--disable-pdb2pka" >&5
3385 echo $ECHO_N "checking for--disable-pdb2pka... $ECHO_C" >&6; }
3386 # Check whether --enable-pdb2pka was given.
3387 if test "${enable_pdb2pka+set}" = set; then
3388 enableval=$enable_pdb2pka; with_pdb2pka="$enableval"
3389 else
3390 with_pdb2pka="enable"
3391
3392 fi
3393
3394
3395 if test "$with_pdb2pka" = "yes" ; then
3396 with_pdb2pka="enable"
3397 elif test "$with_pdb2pka" = "no"; then
3398 with_pdb2pka="disable"
3399 fi
3400
3401 if test "$with_pdb2pka" = "enable" ; then
3402 PY_CFLAGS="$PY_HEADER"
3403 PACKAGE_PATH=""
3404 PDB2PQR_SUBDIRS="$PDB2PQR_SUBDIRS pdb2pka"
3405 { echo "$as_me:$LINENO: result: no" >&5
3406 echo "${ECHO_T}no" >&6; }
3407
3408 { echo "$as_me:$LINENO: result: " >&5
3409 echo "${ECHO_T}" >&6; }
3410 { echo "$as_me:$LINENO: result: ------------- Begin Processing pdb2pka Configure Options -----------" >&5
3411 echo "${ECHO_T}------------- Begin Processing pdb2pka Configure Options -----------" >&6; }
3412
3413 # Test for Numeric install
3414 { echo "$as_me:$LINENO: checking whether you defined Numeric or Numpy" >&5
3415 echo $ECHO_N "checking whether you defined Numeric or Numpy... $ECHO_C" >&6; }
3416 if (test -n "${NUMERIC}") ; then
3417 { echo "$as_me:$LINENO: result: yes" >&5
3418 echo "${ECHO_T}yes" >&6; }
3419 NUMERIC_INC=`find ${NUMERIC} -iname "arrayobject.h" | tail -n1`
3420 if test "$NUMERIC_INC" = ""; then
3421 { { echo "$as_me:$LINENO: error: Please check your NUMERIC path. arrayobject.h cannot be found in ${NUMERIC}" >&5
3422 echo "$as_me: error: Please check your NUMERIC path. arrayobject.h cannot be found in ${NUMERIC}" >&2;}
3423 { (exit 1); exit 1; }; }
3424 fi
3425 NUMERIC_INC=`dirname ${NUMERIC_INC}`
3426 NUMERIC_LIB=`find ${NUMERIC} -iname "Numeric.pth" | tail -n1`
3427 if test "${NUMERIC_LIB}" = ""; then
3428 { { echo "$as_me:$LINENO: error: Please check your NUMERIC path. Numpy.pth cannot be found in ${NUMERIC}" >&5
3429 echo "$as_me: error: Please check your NUMERIC path. Numpy.pth cannot be found in ${NUMERIC}" >&2;}
3430 { (exit 1); exit 1; }; }
3431 fi
3432 NUMERIC_NAME=`cat ${NUMERIC_LIB}`
3433 NUMERIC_LIB=`dirname ${NUMERIC_LIB}`
3434 NUMERIC_LIB=${NUMERIC_LIB}/${NUMERIC_NAME}
3435 if test "${PACKAGE_PATH}" = ""; then
3436 PACKAGE_PATH=${NUMERIC_LIB}
3437 else
3438 PACKAGE_PATH="${PACKAGE_PATH}:${NUMERIC_LIB}"
3439 fi
3440 PY_NUMERIC="-I${NUMERIC_INC} "
3441 PY_CFLAGS="$PY_CFLAGS $PY_NUMERIC"
3442 else
3443 { echo "$as_me:$LINENO: result: no" >&5
3444 echo "${ECHO_T}no" >&6; }
3445 { echo "$as_me:$LINENO: checking for Numeric include files" >&5
3446 echo $ECHO_N "checking for Numeric include files... $ECHO_C" >&6; }
3447 if test -f $PY_PREFIX/include/python$PY_VERSION/Numeric/arrayobject.h; then
3448 PY_NUMERIC="-I$PY_PREFIX/include/python$PY_VERSION/Numeric"
3449 { echo "$as_me:$LINENO: result: $PY_NUMERIC" >&5
3450 echo "${ECHO_T}$PY_NUMERIC" >&6; }
3451 PY_CFLAGS="$PY_CFLAGS $PY_NUMERIC"
3452 else
3453 { echo "$as_me:$LINENO: result: no" >&5
3454 echo "${ECHO_T}no" >&6; }
3455 fi
3456 fi
3457
3458 # If failed, test for numpy
3459 { echo "$as_me:$LINENO: checking whether you defined numpy" >&5
3460 echo $ECHO_N "checking whether you defined numpy... $ECHO_C" >&6; }
3461 if (test -n "${NUMPY}") ; then
3462 { echo "$as_me:$LINENO: result: yes" >&5
3463 echo "${ECHO_T}yes" >&6; }
3464 { echo "$as_me:$LINENO: WARNING: Integration with Numpy is incomplete" >&5
3465 echo "$as_me: WARNING: Integration with Numpy is incomplete" >&2;}
3466 NUMPY_INC=`find ${NUMPY} -iname "arrayobject.h" | tail -n1`
3467 if test "$NUMPY_INC" = ""; then
3468 { { echo "$as_me:$LINENO: error: Please check your NUMPY path. arrayobject.h cannot be found in ${NUMPY}" >&5
3469 echo "$as_me: error: Please check your NUMPY path. arrayobject.h cannot be found in ${NUMPY}" >&2;}
3470 { (exit 1); exit 1; }; }
3471 fi
3472 NUMPY_INC=`dirname ${NUMPY_INC}`
3473 NUMPY_LIB=`find ${NUMPY} -iname "Numpy.pth" | tail -n1`
3474 if test "${NUMPY_LIB}" = ""; then
3475 { { echo "$as_me:$LINENO: error: Please check your NUMPY path. Numpy.pth cannot be found in ${NUMPY}" >&5
3476 echo "$as_me: error: Please check your NUMPY path. Numpy.pth cannot be found in ${NUMPY}" >&2;}
3477 { (exit 1); exit 1; }; }
3478 fi
3479 NUMPY_NAME=`cat ${NUMPY_LIB}`
3480 NUMPY_LIB=`dirname ${NUMPY_LIB}`
3481 NUMPY_LIB=${NUMPY_LIB}/${NUMPY_NAME}
3482 if test "${PACKAGE_PATH}" = ""; then
3483 PACKAGE_PATH=${NUMPY_LIB}
3484 else
3485 PACKAGE_PATH="${PACKAGE_PATH}:${NUMPY_LIB}"
3486 fi
3487 PY_NUMPY="-I${NUMPY_INC}"
3488 PY_CFLAGS="$PY_CFLAGS $PY_NUMPY"
3489 else
3490 { echo "$as_me:$LINENO: result: no" >&5
3491 echo "${ECHO_T}no" >&6; }
3492 if test "$PY_NUMERIC" = "" ; then
3493 { echo "$as_me:$LINENO: checking for numpy includes files" >&5
3494 echo $ECHO_N "checking for numpy includes files... $ECHO_C" >&6; }
3495 if test -f $PY_PREFIX/lib/python$PY_VERSION/site-packages/numpy/core/include/numpy/arrayobject.h; then
3496 PY_NUMERIC="-I$PY_PREFIX/lib/python$PY_VERSION/site-packages/numpy/core/include/numpy"
3497 { echo "$as_me:$LINENO: result: $PY_NUMERIC" >&5
3498 echo "${ECHO_T}$PY_NUMERIC" >&6; }
3499 PY_CFLAGS="$PY_CFLAGS $PY_NUMERIC"
3500 elif test -f /opt/rocks/lib/python$PY_VERSION/site-packages/numpy/core/include/numpy/arrayobject.h; then
3501 { echo "$as_me:$LINENO: result: $PY_NUMERIC" >&5
3502 echo "${ECHO_T}$PY_NUMERIC" >&6; }
3503 PY_FLAGS="$PY_HEADER -I/opt/rocks/lib/python$PY_VERSION/site-packages/numpy/core/include/numpy"
3504 else
3505 { { echo "$as_me:$LINENO: error: Unable to find Numeric or Numpy! Please install Numeric or Numpy or specify the location with ./configure NUMPY=path_to_numpy or NUMERIC=path_to_numeric or disable PDB2PKA during configuration with --disable-pdb2pka" >&5
3506 echo "$as_me: error: Unable to find Numeric or Numpy! Please install Numeric or Numpy or specify the location with ./configure NUMPY=path_to_numpy or NUMERIC=path_to_numeric or disable PDB2PKA during configuration with --disable-pdb2pka" >&2;}
3507 { (exit 1); exit 1; }; }
3508 fi
3509 fi
3510 fi
3511
3512 # Test for APBS Python wrappers
3513 #AC_MSG_CHECKING([if --with-apbsdir was used])
3514 #AC_ARG_WITH(apbsdir,
3515 # [AC_HELP_STRING([--with-apbsdir=PATH], [full path to top-level APBS directory])],
3516 # [apbsdir="$with_apbsdir/tools/python"; AC_MSG_RESULT([yes])],
3517 # [apbsdir=""; AC_MSG_RESULT([no])]
3518 #)
3519
3520 #if test "$apbsdir" = ""; then
3521 # AC_MSG_CHECKING([for APBSDIR environment variable])
3522 # if test "$APBSDIR" != ""; then
3523 # apbsdir="$APBSDIR/tools/python"
3524 # AC_MSG_RESULT([yes])
3525 # else
3526 # AC_MSG_RESULT([no])
3527 # apbsdir="./pdb2pka"
3528 # fi
3529 #fi
3530
3531 #AC_MSG_CHECKING([for compiled APBS Python wrappers])
3532 #apbserror=0
3533 #if test -f "$apbsdir/apbslib.py"; then
3534 # if test -f "$apbsdir/_apbslib.so"; then
3535 # AC_MSG_RESULT([$apbsdir])
3536 # else
3537 # AC_MSG_RESULT([no])
3538 # apbserror=1
3539 # fi
3540 #else
3541 # AC_MSG_RESULT([no])
3542 # apbserror=1
3543 #fi
3544
3545 #if test "$apbserror" -eq 1; then
3546 # echo ""
3547 # echo "Unable to find apbslib.py and _apbslib.so in $apbsdir!"
3548 # echo "Compiled APBS Python wrappers are needed to use the pdb2pka functions"
3549 # echo "Please recompile APBS with the '--enable-python' flag."
3550 # echo ""
3551 # AC_MSG_ERROR(["APBS Python wrappers not found!"])
3552 #fi
3553
3554
3555 #AC_SUBST(APBS_PYDIR,[$apbsdir])
3556 { echo "$as_me:$LINENO: result: ------------- End Processing pdb2ka Configure Options -----------" >&5
3557 echo "${ECHO_T}------------- End Processing pdb2ka Configure Options -----------" >&6; }
3558 { echo "$as_me:$LINENO: result: " >&5
3559 echo "${ECHO_T}" >&6; }
3560
3561
3562 else
3563 PY_CFLAGS="$PY_HEADER"
3564 { echo "$as_me:$LINENO: result: yes" >&5
3565 echo "${ECHO_T}yes" >&6; }
3566 fi
3567
3568 #PY_CFLAGS="$PY_CFLAGS -I$PY_PREFIX/lib/python$PY_VERSION "
3569
3570 PY_CFLAGS=$PY_CFLAGS
3571
3572 PDB2PQR_SUBDIRS=$PDB2PQR_SUBDIRS
3573
3574
3575
3576
3577 # Check whether --with-url was given.
3578 if test "${with_url+set}" = set; then
3579 withval=$with_url; URL=$withval
3580 else
3581 URL="http://`uname -n`/pdb2pqr"
3582 fi
3583
3584
3585 echo ${URL} > url_test
3586 isslash=`awk -F"/" '{print $NF}' url_test`
3587 hashttp=`awk -F"http://" '{print $2}' url_test`
3588 rm -f url_test
3589
3590 if ! test -z $isslash ; then
3591 URL=${URL}/
3592 fi
3593
3594 if test -z $hashttp ; then
3595 URL=http://${URL}
3596 fi
3597
3598
3599
3600
3601
3602 # Check whether --with-max-atoms was given.
3603 if test "${with_max_atoms+set}" = set; then
3604 withval=$with_max_atoms; MAX_ATOMS=$withval
3605 else
3606 MAX_ATOMS=10000
3607 fi
3608
3609
3610
3611 # Check whether --with-opal was given.
3612 if test "${with_opal+set}" = set; then
3613 withval=$with_opal; OPALURL=$withval
3614 else
3615 OPALURL=""
3616 fi
3617
3618
3619 if test "$OPALURL" = "yes"; then
3620 OPALURL="http://ws.nbcr.net:8080/axis-1.2.1/services/Pdb2pqrOpalService"
3621 fi
3622
3623 if test "$OPALURL" != ""; then
3624 if test -d $PY_PREFIX/lib/python$PY_VERSION/site-packages/ZSI ; then
3625 echo ZSI is installed
3626 else
3627 # need to install ZSI
3628 echo Installing ZSI. This might take a while...
3629 tar zxvf ZSI-1.7.tar.gz
3630 cd ZSI-1.7
3631 if test `whoami` = "root"; then
3632 $py_path setup.py install
3633 else
3634 zsi_pyxml_install="true"
3635 $py_path setup.py install --prefix=${prefix}
3636 fi
3637 cd ..
3638 fi
3639
3640 if test -d $PY_PREFIX/lib/python$PY_VERSION/site-packages/_xmlplus ; then
3641 echo PyXML is installed
3642 else
3643 # need to install ZSI
3644 echo Installing PyXML. This might take a while...
3645 tar zxvf PyXML-0.8.4.tar.gz
3646 cd PyXML-0.8.4
3647 if test `whoami` = "root"; then
3648 $py_path setup.py build
3649 $py_path setup.py install
3650 else
3651 zsi_pyxml_install="true"
3652 $py_path setup.py build
3653 $py_path setup.py install --prefix=${prefix}
3654 fi
3655 cd ..
3656 fi
3657 fi
3658
3659 # Add tmp/ if it doesn't already exist
3660
3661 { echo "$as_me:$LINENO: checking for tmp/" >&5
3662 echo $ECHO_N "checking for tmp/... $ECHO_C" >&6; }
3663 if test "${ac_cv_file_tmp_+set}" = set; then
3664 echo $ECHO_N "(cached) $ECHO_C" >&6
3665 else
3666 test "$cross_compiling" = yes &&
3667 { { echo "$as_me:$LINENO: error: cannot check for file existence when cross compiling" >&5
3668 echo "$as_me: error: cannot check for file existence when cross compiling" >&2;}
3669 { (exit 1); exit 1; }; }
3670 if test -r "tmp/"; then
3671 ac_cv_file_tmp_=yes
3672 else
3673 ac_cv_file_tmp_=no
3674 fi
3675 fi
3676 { echo "$as_me:$LINENO: result: $ac_cv_file_tmp_" >&5
3677 echo "${ECHO_T}$ac_cv_file_tmp_" >&6; }
3678 if test $ac_cv_file_tmp_ = yes; then
3679 hastmp="yes"
3680 else
3681 hastmp="no"
3682 fi
3683
3684
3685 if test "${hastmp}" = "no"; then
3686 mkdir tmp
3687 fi
3688
3689 chmod 777 tmp
3690
3691 chmod o+x tests/test/test.sh
3692 chmod u+x tests/test/test.sh
3693 chmod o+x tests/adv-test/test.sh
3694 chmod u+x tests/adv-test/test.sh
3695
3696 if test "${prefix}" != `pwd` ; then
3697 website_install=${URL}
3698 pdb2pqr_cgi_install=${URL}pdb2pqr.cgi
3699
3700 echo ${website_install} > website_install_file
3701 echo ${prefix} > prefix_file
3702 last_website_install=`awk -F"/" '{print $(NF-1)}' website_install_file`
3703 last_prefix=`awk -F"/" '{print $(NF-1)}' prefix_file`
3704 rm -f website_install_file prefix_file
3705 fi
3706
3707 #if test "${prefix}" != `pwd` ; then
3708 # if test "${default_prefix_used}" = "true" ; then
3709 # website_install=${URL}
3710 # pdb2pqr_cgi_install=${URL}pdb2pqr.cgi
3711 # else
3712 # echo ${prefix} > install_dir_file
3713 # lastdir=`awk -F"/" '{print $NF}' install_dir_file`
3714
3715 # if test -z $lastdir; then
3716 # last=`awk -F"/" '{print NF-1}' install_dir_file`
3717 # lastdir=`awk -F"/" '{print $(NF-1)}' install_dir_file`
3718 # fi
3719
3720 # rm -f install_dir_file
3721
3722 # website_install=${URL}$lastdir
3723 # pdb2pqr_cgi_install=${URL}$lastdir/pdb2pqr.cgi
3724 # fi
3725 #fi
3726
3727 # Set the max number of atoms in a protein when not using Opal for job submission
3728 # Also move pdb2pqr.py to pdb2pqr.cgi
3729 sed -e 's%@MAXATOMS@%'${MAX_ATOMS}'%' -e 's%@PACKAGE_PATH@%'${PACKAGE_PATH}'%' -e 's%@WHICHPYTHON@%'${py_path}'%' pdb2pqr.py.in > pdb2pqr.py
3730 chmod 755 pdb2pqr.py
3731 cp pdb2pqr.py pdb2pqr.cgi
3732
3733 #echo ${srcpath} > srcpathtemp1
3734 #sed 's/\//\\\//g' srcpathtemp1 > srcpathtemp2
3735 #srcpathvar=`cat srcpathtemp2`
3736 #rm srcpathtemp1 srcpathtemp2
3737 #sed -e 's/\@srcpath\@/'${srcpathvar}'/g' src/server.py.in > src/server.py.in.tmp.1
3738
3739 #if test "${prefix}" != `pwd` ; then
3740 #echo ${prefix} > install_dir_temp1
3741 #sed 's/\//\\\//g' install_dir_temp1 > install_dir_temp2
3742 #install_dir_var=`cat install_dir_temp2`
3743 #rm install_dir_temp1 install_dir_temp2
3744 # sed -e 's/\@srcpath\@/'${install_dir_var}'/g' src/server.py.in > src/server.py.install.tmp.1
3745 #fi
3746
3747 echo ${prefix} > install_dir_temp1
3748 sed 's/\//\\\//g' install_dir_temp1 > install_dir_temp2
3749 install_dir_var=`cat install_dir_temp2`
3750 rm install_dir_temp1 install_dir_temp2
3751 sed -e 's/\@srcpath\@/'${install_dir_var}'/g' src/server.py.in > src/server.py.in.tmp.1
3752
3753
3754
3755 website=${URL}
3756 echo $website > websitetemp1
3757 sed 's/\//\\\//g' websitetemp1 > websitetemp2
3758 websitevar=`cat websitetemp2`
3759 rm websitetemp1 websitetemp2
3760 sed -e 's/\@website\@/'${websitevar}'/g' src/server.py.in.tmp.1 > src/server.py.in.tmp.2
3761 mv src/server.py.in.tmp.2 src/server.py
3762 rm -rf src/server.py.in.tmp.*
3763
3764 #if test "${prefix}" != `pwd` ; then
3765 # echo ${website_install} > website_install_temp1
3766 # sed 's/\//\\\//g' website_install_temp1 > website_install_temp2
3767 # website_install_var=`cat website_install_temp2`
3768 # rm website_install_temp1 website_install_temp2
3769 # sed -e 's/\@website\@/'${website_install_var}'/g' src/server.py.install.tmp.1 > src/server.py.install.tmp.2
3770 # cp src/server.py.install.tmp.2 src/server.py.install
3771 # rm -rf src/server.py.install.tmp.*
3772 #fi
3773
3774
3775
3776 if test -z "${OPALURL}" ; then
3777 pdb2pqr_cgi=${URL}pdb2pqr.cgi
3778 else
3779 pdb2pqr_cgi=${URL}pdb2pqr-opal.cgi
3780 fi
3781 echo $pdb2pqr_cgi > actiontemp1
3782 sed 's/\//\\\//g' actiontemp1 > actiontemp2
3783 actionvar=`cat actiontemp2`
3784 rm actiontemp1 actiontemp2
3785 if test -z "${OPALURL}" ; then
3786 sed -e 's/\@action\@/'${actionvar}'/g' \
3787 -e '/@WITHOPAL@/d' \
3788 -e 's%@MAXATOMS@%'${MAX_ATOMS}'%' \
3789 -e '/@WITHOUTOPAL@/,/@WITHOUTOPAL@/d' html/server.html.in > html/server.html.tmp
3790 sed -e 's/\@website\@/'${websitevar}'/g' html/server.html.tmp > html/server.html.tmp.2
3791 cp html/server.html.tmp.2 html/server.html
3792 rm html/server.html.tmp*
3793 else
3794 sed -e 's/\@action\@/'${actionvar}'/g' \
3795 -e '/@WITHOPAL@/,/@WITHOPAL@/d' \
3796 -e 's/\@website\@/'${websitevar}'/g' \
3797 -e '/@WITHOUTOPAL@/d' html/server.html.in > html/server.html
3798 fi
3799 cp html/server.html index.html
3800
3801 if test "${prefix}" != `pwd` ; then
3802 if test -z "${OPALURL}" ; then
3803 pdb2pqr_cgi_install=${URL}pdb2pqr.cgi
3804 else
3805 pdb2pqr_cgi_install=${URL}pdb2pqr-opal.cgi
3806 fi
3807 echo $pdb2pqr_cgi_install > action_install_temp1
3808 sed 's/\//\\\//g' action_install_temp1 > action_install_temp2
3809 action_install_var=`cat action_install_temp2`
3810 rm action_install_temp1 action_install_temp2
3811 # sed -e 's/\@action\@/'${action_install_var}'/g' html/server.html.in > html/server.html.install.tmp
3812 # sed -e 's/\@website\@/'${website_install_var}'/g' html/server.html.install.tmp > html/server.html.install.tmp.2
3813 # cp html/server.html.install.tmp.2 html/server.html.install
3814 # rm html/server.html.install.tmp*
3815 fi
3816
3817
3818
3819 sed -e 's%@OPALURL@%'${OPALURL}'%' -e 's%@WHICHPYTHON@%'${py_path}'%' pdb2pqr-opal.py > pdb2pqr-opal.cgi
3820 sed -e 's%@OPALURL@%'${OPALURL}'%' -e 's%@WHICHPYTHON@%'${py_path}'%' querystatus.py > querystatus.cgi
3821 chmod 755 pdb2pqr-opal.cgi
3822 chmod 755 querystatus.cgi
3823
3824
3825
3826
3827 PDB2PQR_SUBDIRS="${PDB2PQR_SUBDIRS} tests"
3828
3829
3830 { echo "$as_me:$LINENO: result: ------------- End Processing PDB2PQR Configure Options -----------" >&5
3831 echo "${ECHO_T}------------- End Processing PDB2PQR Configure Options -----------" >&6; }
3832 { echo "$as_me:$LINENO: result: " >&5
3833 echo "${ECHO_T}" >&6; }
3834 if test -n "${PDB2PQR_SUBDIRS}"; then
3835 ac_config_files="$ac_config_files Makefile pdb2pka/Makefile pdb2pka/substruct/Makefile tests/Makefile tests/test/Makefile tests/adv-test/Makefile"
3836
3837 cat >confcache <<\_ACEOF
3838 # This file is a shell script that caches the results of configure
3839 # tests run on this system so they can be shared between configure
3840 # scripts and configure runs, see configure's option --config-cache.
3841 # It is not useful on other systems. If it contains results you don't
3842 # want to keep, you may remove or edit it.
3843 #
3844 # config.status only pays attention to the cache file if you give it
3845 # the --recheck option to rerun configure.
3846 #
3847 # `ac_cv_env_foo' variables (set or unset) will be overridden when
3848 # loading this file, other *unset* `ac_cv_foo' will be assigned the
3849 # following values.
3850
3851 _ACEOF
3852
3853 # The following way of writing the cache mishandles newlines in values,
3854 # but we know of no workaround that is simple, portable, and efficient.
3855 # So, we kill variables containing newlines.
3856 # Ultrix sh set writes to stderr and can't be redirected directly,
3857 # and sets the high bit in the cache file unless we assign to the vars.
3858 (
3859 for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
3860 eval ac_val=\$$ac_var
3861 case $ac_val in #(
3862 *${as_nl}*)
3863 case $ac_var in #(
3864 *_cv_*) { echo "$as_me:$LINENO: WARNING: Cache variable $ac_var contains a newline." >&5
3865 echo "$as_me: WARNING: Cache variable $ac_var contains a newline." >&2;} ;;
3866 esac
3867 case $ac_var in #(
3868 _ | IFS | as_nl) ;; #(
3869 *) $as_unset $ac_var ;;
3870 esac ;;
3871 esac
3872 done
3873
3874 (set) 2>&1 |
3875 case $as_nl`(ac_space=' '; set) 2>&1` in #(
3876 *${as_nl}ac_space=\ *)
3877 # `set' does not quote correctly, so add quotes (double-quote
3878 # substitution turns \\\\ into \\, and sed turns \\ into \).
3879 sed -n \
3880 "s/'/'\\\\''/g;
3881 s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
3882 ;; #(
3883 *)
3884 # `set' quotes correctly as required by POSIX, so do not add quotes.
3885 sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
3886 ;;
3887 esac |
3888 sort
3889 ) |
3890 sed '
3891 /^ac_cv_env_/b end
3892 t clear
3893 :clear
3894 s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
3895 t end
3896 s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
3897 :end' >>confcache
3898 if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
3899 if test -w "$cache_file"; then
3900 test "x$cache_file" != "x/dev/null" &&
3901 { echo "$as_me:$LINENO: updating cache $cache_file" >&5
3902 echo "$as_me: updating cache $cache_file" >&6;}
3903 cat confcache >$cache_file
3904 else
3905 { echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5
3906 echo "$as_me: not updating unwritable cache $cache_file" >&6;}
3907 fi
3908 fi
3909 rm -f confcache
3910
3911 test "x$prefix" = xNONE && prefix=$ac_default_prefix
3912 # Let make expand exec_prefix.
3913 test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
3914
3915 # Transform confdefs.h into DEFS.
3916 # Protect against shell expansion while executing Makefile rules.
3917 # Protect against Makefile macro expansion.
3918 #
3919 # If the first sed substitution is executed (which looks for macros that
3920 # take arguments), then branch to the quote section. Otherwise,
3921 # look for a macro that doesn't take arguments.
3922 ac_script='
3923 t clear
3924 :clear
3925 s/^[ ]*#[ ]*define[ ][ ]*\([^ (][^ (]*([^)]*)\)[ ]*\(.*\)/-D\1=\2/g
3926 t quote
3927 s/^[ ]*#[ ]*define[ ][ ]*\([^ ][^ ]*\)[ ]*\(.*\)/-D\1=\2/g
3928 t quote
3929 b any
3930 :quote
3931 s/[ `~#$^&*(){}\\|;'\''"<>?]/\\&/g
3932 s/\[/\\&/g
3933 s/\]/\\&/g
3934 s/\$/$$/g
3935 H
3936 :any
3937 ${
3938 g
3939 s/^\n//
3940 s/\n/ /g
3941 p
3942 }
3943 '
3944 DEFS=`sed -n "$ac_script" confdefs.h`
3945
3946
3947 ac_libobjs=
3948 ac_ltlibobjs=
3949 for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
3950 # 1. Remove the extension, and $U if already installed.
3951 ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
3952 ac_i=`echo "$ac_i" | sed "$ac_script"`
3953 # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
3954 # will be set to the directory where LIBOBJS objects are built.
3955 ac_libobjs="$ac_libobjs \${LIBOBJDIR}$ac_i\$U.$ac_objext"
3956 ac_ltlibobjs="$ac_ltlibobjs \${LIBOBJDIR}$ac_i"'$U.lo'
3957 done
3958 LIBOBJS=$ac_libobjs
3959
3960 LTLIBOBJS=$ac_ltlibobjs
3961
3962
3963 if test -z "${AMDEP_TRUE}" && test -z "${AMDEP_FALSE}"; then
3964 { { echo "$as_me:$LINENO: error: conditional \"AMDEP\" was never defined.
3965 Usually this means the macro was only invoked conditionally." >&5
3966 echo "$as_me: error: conditional \"AMDEP\" was never defined.
3967 Usually this means the macro was only invoked conditionally." >&2;}
3968 { (exit 1); exit 1; }; }
3969 fi
3970 if test -z "${am__fastdepCXX_TRUE}" && test -z "${am__fastdepCXX_FALSE}"; then
3971 { { echo "$as_me:$LINENO: error: conditional \"am__fastdepCXX\" was never defined.
3972 Usually this means the macro was only invoked conditionally." >&5
3973 echo "$as_me: error: conditional \"am__fastdepCXX\" was never defined.
3974 Usually this means the macro was only invoked conditionally." >&2;}
3975 { (exit 1); exit 1; }; }
3976 fi
3977
3978 : ${CONFIG_STATUS=./config.status}
3979 ac_clean_files_save=$ac_clean_files
3980 ac_clean_files="$ac_clean_files $CONFIG_STATUS"
3981 { echo "$as_me:$LINENO: creating $CONFIG_STATUS" >&5
3982 echo "$as_me: creating $CONFIG_STATUS" >&6;}
3983 cat >$CONFIG_STATUS <<_ACEOF
3984 #! $SHELL
3985 # Generated by $as_me.
3986 # Run this file to recreate the current configuration.
3987 # Compiler output produced by configure, useful for debugging
3988 # configure, is in config.log if it exists.
3989
3990 debug=false
3991 ac_cs_recheck=false
3992 ac_cs_silent=false
3993 SHELL=\${CONFIG_SHELL-$SHELL}
3994 _ACEOF
3995
3996 cat >>$CONFIG_STATUS <<\_ACEOF
3997 ## --------------------- ##
3998 ## M4sh Initialization. ##
3999 ## --------------------- ##
4000
4001 # Be Bourne compatible
4002 if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
4003 emulate sh
4004 NULLCMD=:
4005 # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
4006 # is contrary to our usage. Disable this feature.
4007 alias -g '${1+"$@"}'='"$@"'
4008 setopt NO_GLOB_SUBST
4009 else
4010 case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
4011 fi
4012 BIN_SH=xpg4; export BIN_SH # for Tru64
4013 DUALCASE=1; export DUALCASE # for MKS sh
4014
4015
4016 # PATH needs CR
4017 # Avoid depending upon Character Ranges.
4018 as_cr_letters='abcdefghijklmnopqrstuvwxyz'
4019 as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
4020 as_cr_Letters=$as_cr_letters$as_cr_LETTERS
4021 as_cr_digits='0123456789'
4022 as_cr_alnum=$as_cr_Letters$as_cr_digits
4023
4024 # The user is always right.
4025 if test "${PATH_SEPARATOR+set}" != set; then
4026 echo "#! /bin/sh" >conf$$.sh
4027 echo "exit 0" >>conf$$.sh
4028 chmod +x conf$$.sh
4029 if (PATH="/nonexistent;."; conf$$.sh) >/dev/null 2>&1; then
4030 PATH_SEPARATOR=';'
4031 else
4032 PATH_SEPARATOR=:
4033 fi
4034 rm -f conf$$.sh
4035 fi
4036
4037 # Support unset when possible.
4038 if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
4039 as_unset=unset
4040 else
4041 as_unset=false
4042 fi
4043
4044
4045 # IFS
4046 # We need space, tab and new line, in precisely that order. Quoting is
4047 # there to prevent editors from complaining about space-tab.
4048 # (If _AS_PATH_WALK were called with IFS unset, it would disable word
4049 # splitting by setting IFS to empty value.)
4050 as_nl='
4051 '
4052 IFS=" "" $as_nl"
4053
4054 # Find who we are. Look in the path if we contain no directory separator.
4055 case $0 in
4056 *[\\/]* ) as_myself=$0 ;;
4057 *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
4058 for as_dir in $PATH
4059 do
4060 IFS=$as_save_IFS
4061 test -z "$as_dir" && as_dir=.
4062 test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
4063 done
4064 IFS=$as_save_IFS
4065
4066 ;;
4067 esac
4068 # We did not find ourselves, most probably we were run as `sh COMMAND'
4069 # in which case we are not to be found in the path.
4070 if test "x$as_myself" = x; then
4071 as_myself=$0
4072 fi
4073 if test ! -f "$as_myself"; then
4074 echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
4075 { (exit 1); exit 1; }
4076 fi
4077
4078 # Work around bugs in pre-3.0 UWIN ksh.
4079 for as_var in ENV MAIL MAILPATH
4080 do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
4081 done
4082 PS1='$ '
4083 PS2='> '
4084 PS4='+ '
4085
4086 # NLS nuisances.
4087 for as_var in \
4088 LANG LANGUAGE LC_ADDRESS LC_ALL LC_COLLATE LC_CTYPE LC_IDENTIFICATION \
4089 LC_MEASUREMENT LC_MESSAGES LC_MONETARY LC_NAME LC_NUMERIC LC_PAPER \
4090 LC_TELEPHONE LC_TIME
4091 do
4092 if (set +x; test -z "`(eval $as_var=C; export $as_var) 2>&1`"); then
4093 eval $as_var=C; export $as_var
4094 else
4095 ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
4096 fi
4097 done
4098
4099 # Required to use basename.
4100 if expr a : '\(a\)' >/dev/null 2>&1 &&
4101 test "X`expr 00001 : '.*\(...\)'`" = X001; then
4102 as_expr=expr
4103 else
4104 as_expr=false
4105 fi
4106
4107 if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
4108 as_basename=basename
4109 else
4110 as_basename=false
4111 fi
4112
4113
4114 # Name of the executable.
4115 as_me=`$as_basename -- "$0" ||
4116 $as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
4117 X"$0" : 'X\(//\)$' \| \
4118 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
4119 echo X/"$0" |
4120 sed '/^.*\/\([^/][^/]*\)\/*$/{
4121 s//\1/
4122 q
4123 }
4124 /^X\/\(\/\/\)$/{
4125 s//\1/
4126 q
4127 }
4128 /^X\/\(\/\).*/{
4129 s//\1/
4130 q
4131 }
4132 s/.*/./; q'`
4133
4134 # CDPATH.
4135 $as_unset CDPATH
4136
4137
4138
4139 as_lineno_1=$LINENO
4140 as_lineno_2=$LINENO
4141 test "x$as_lineno_1" != "x$as_lineno_2" &&
4142 test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
4143
4144 # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
4145 # uniformly replaced by the line number. The first 'sed' inserts a
4146 # line-number line after each line using $LINENO; the second 'sed'
4147 # does the real work. The second script uses 'N' to pair each
4148 # line-number line with the line containing $LINENO, and appends
4149 # trailing '-' during substitution so that $LINENO is not a special
4150 # case at line end.
4151 # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
4152 # scripts with optimization help from Paolo Bonzini. Blame Lee
4153 # E. McMahon (1931-1989) for sed's syntax. :-)
4154 sed -n '
4155 p
4156 /[$]LINENO/=
4157 ' <$as_myself |
4158 sed '
4159 s/[$]LINENO.*/&-/
4160 t lineno
4161 b
4162 :lineno
4163 N
4164 :loop
4165 s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
4166 t loop
4167 s/-\n.*//
4168 ' >$as_me.lineno &&
4169 chmod +x "$as_me.lineno" ||
4170 { echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
4171 { (exit 1); exit 1; }; }
4172
4173 # Don't try to exec as it changes $[0], causing all sort of problems
4174 # (the dirname of $[0] is not the place where we might find the
4175 # original and so on. Autoconf is especially sensitive to this).
4176 . "./$as_me.lineno"
4177 # Exit status is that of the last command.
4178 exit
4179 }
4180
4181
4182 if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
4183 as_dirname=dirname
4184 else
4185 as_dirname=false
4186 fi
4187
4188 ECHO_C= ECHO_N= ECHO_T=
4189 case `echo -n x` in
4190 -n*)
4191 case `echo 'x\c'` in
4192 *c*) ECHO_T=' ';; # ECHO_T is single tab character.
4193 *) ECHO_C='\c';;
4194 esac;;
4195 *)
4196 ECHO_N='-n';;
4197 esac
4198
4199 if expr a : '\(a\)' >/dev/null 2>&1 &&
4200 test "X`expr 00001 : '.*\(...\)'`" = X001; then
4201 as_expr=expr
4202 else
4203 as_expr=false
4204 fi
4205
4206 rm -f conf$$ conf$$.exe conf$$.file
4207 if test -d conf$$.dir; then
4208 rm -f conf$$.dir/conf$$.file
4209 else
4210 rm -f conf$$.dir
4211 mkdir conf$$.dir
4212 fi
4213 echo >conf$$.file
4214 if ln -s conf$$.file conf$$ 2>/dev/null; then
4215 as_ln_s='ln -s'
4216 # ... but there are two gotchas:
4217 # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
4218 # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
4219 # In both cases, we have to default to `cp -p'.
4220 ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
4221 as_ln_s='cp -p'
4222 elif ln conf$$.file conf$$ 2>/dev/null; then
4223 as_ln_s=ln
4224 else
4225 as_ln_s='cp -p'
4226 fi
4227 rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
4228 rmdir conf$$.dir 2>/dev/null
4229
4230 if mkdir -p . 2>/dev/null; then
4231 as_mkdir_p=:
4232 else
4233 test -d ./-p && rmdir ./-p
4234 as_mkdir_p=false
4235 fi
4236
4237 # Find out whether ``test -x'' works. Don't use a zero-byte file, as
4238 # systems may use methods other than mode bits to determine executability.
4239 cat >conf$$.file <<_ASEOF
4240 #! /bin/sh
4241 exit 0
4242 _ASEOF
4243 chmod +x conf$$.file
4244 if test -x conf$$.file >/dev/null 2>&1; then
4245 as_executable_p="test -x"
4246 else
4247 as_executable_p=:
4248 fi
4249 rm -f conf$$.file
4250
4251 # Sed expression to map a string onto a valid CPP name.
4252 as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
4253
4254 # Sed expression to map a string onto a valid variable name.
4255 as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
4256
4257
4258 exec 6>&1
4259
4260 # Save the log message, to keep $[0] and so on meaningful, and to
4261 # report actual input values of CONFIG_FILES etc. instead of their
4262 # values after options handling.
4263 ac_log="
4264 This file was extended by PDB2PQR $as_me 1.3.0, which was
4265 generated by GNU Autoconf 2.60. Invocation command line was
4266
4267 CONFIG_FILES = $CONFIG_FILES
4268 CONFIG_HEADERS = $CONFIG_HEADERS
4269 CONFIG_LINKS = $CONFIG_LINKS
4270 CONFIG_COMMANDS = $CONFIG_COMMANDS
4271 $ $0 $@
4272
4273 on `(hostname || uname -n) 2>/dev/null | sed 1q`
4274 "
4275
4276 _ACEOF
4277
4278 cat >>$CONFIG_STATUS <<_ACEOF
4279 # Files that config.status was made for.
4280 config_files="$ac_config_files"
4281 config_commands="$ac_config_commands"
4282
4283 _ACEOF
4284
4285 cat >>$CONFIG_STATUS <<\_ACEOF
4286 ac_cs_usage="\
4287 \`$as_me' instantiates files from templates according to the
4288 current configuration.
4289
4290 Usage: $0 [OPTIONS] [FILE]...
4291
4292 -h, --help print this help, then exit
4293 -V, --version print version number, then exit
4294 -q, --quiet do not print progress messages
4295 -d, --debug don't remove temporary files
4296 --recheck update $as_me by reconfiguring in the same conditions
4297 --file=FILE[:TEMPLATE]
4298 instantiate the configuration file FILE
4299
4300 Configuration files:
4301 $config_files
4302
4303 Configuration commands:
4304 $config_commands
4305
4306 Report bugs to <bug-autoconf@gnu.org>."
4307
4308 _ACEOF
4309 cat >>$CONFIG_STATUS <<_ACEOF
4310 ac_cs_version="\\
4311 PDB2PQR config.status 1.3.0
4312 configured by $0, generated by GNU Autoconf 2.60,
4313 with options \\"`echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
4314
4315 Copyright (C) 2006 Free Software Foundation, Inc.
4316 This config.status script is free software; the Free Software Foundation
4317 gives unlimited permission to copy, distribute and modify it."
4318
4319 ac_pwd='$ac_pwd'
4320 srcdir='$srcdir'
4321 INSTALL='$INSTALL'
4322 _ACEOF
4323
4324 cat >>$CONFIG_STATUS <<\_ACEOF
4325 # If no file are specified by the user, then we need to provide default
4326 # value. By we need to know if files were specified by the user.
4327 ac_need_defaults=:
4328 while test $# != 0
4329 do
4330 case $1 in
4331 --*=*)
4332 ac_option=`expr "X$1" : 'X\([^=]*\)='`
4333 ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
4334 ac_shift=:
4335 ;;
4336 *)
4337 ac_option=$1
4338 ac_optarg=$2
4339 ac_shift=shift
4340 ;;
4341 esac
4342
4343 case $ac_option in
4344 # Handling of the options.
4345 -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
4346 ac_cs_recheck=: ;;
4347 --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
4348 echo "$ac_cs_version"; exit ;;
4349 --debug | --debu | --deb | --de | --d | -d )
4350 debug=: ;;
4351 --file | --fil | --fi | --f )
4352 $ac_shift
4353 CONFIG_FILES="$CONFIG_FILES $ac_optarg"
4354 ac_need_defaults=false;;
4355 --he | --h | --help | --hel | -h )
4356 echo "$ac_cs_usage"; exit ;;
4357 -q | -quiet | --quiet | --quie | --qui | --qu | --q \
4358 | -silent | --silent | --silen | --sile | --sil | --si | --s)
4359 ac_cs_silent=: ;;
4360
4361 # This is an error.
4362 -*) { echo "$as_me: error: unrecognized option: $1
4363 Try \`$0 --help' for more information." >&2
4364 { (exit 1); exit 1; }; } ;;
4365
4366 *) ac_config_targets="$ac_config_targets $1"
4367 ac_need_defaults=false ;;
4368
4369 esac
4370 shift
4371 done
4372
4373 ac_configure_extra_args=
4374
4375 if $ac_cs_silent; then
4376 exec 6>/dev/null
4377 ac_configure_extra_args="$ac_configure_extra_args --silent"
4378 fi
4379
4380 _ACEOF
4381 cat >>$CONFIG_STATUS <<_ACEOF
4382 if \$ac_cs_recheck; then
4383 echo "running CONFIG_SHELL=$SHELL $SHELL $0 "$ac_configure_args \$ac_configure_extra_args " --no-create --no-recursion" >&6
4384 CONFIG_SHELL=$SHELL
4385 export CONFIG_SHELL
4386 exec $SHELL "$0"$ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
4387 fi
4388
4389 _ACEOF
4390 cat >>$CONFIG_STATUS <<\_ACEOF
4391 exec 5>>config.log
4392 {
4393 echo
4394 sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
4395 ## Running $as_me. ##
4396 _ASBOX
4397 echo "$ac_log"
4398 } >&5
4399
4400 _ACEOF
4401 cat >>$CONFIG_STATUS <<_ACEOF
4402 #
4403 # INIT-COMMANDS
4404 #
4405 AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"
4406
4407 _ACEOF
4408
4409 cat >>$CONFIG_STATUS <<\_ACEOF
4410
4411 # Handling of arguments.
4412 for ac_config_target in $ac_config_targets
4413 do
4414 case $ac_config_target in
4415 "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
4416 "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
4417 "pdb2pka/Makefile") CONFIG_FILES="$CONFIG_FILES pdb2pka/Makefile" ;;
4418 "pdb2pka/substruct/Makefile") CONFIG_FILES="$CONFIG_FILES pdb2pka/substruct/Makefile" ;;
4419 "tests/Makefile") CONFIG_FILES="$CONFIG_FILES tests/Makefile" ;;
4420 "tests/test/Makefile") CONFIG_FILES="$CONFIG_FILES tests/test/Makefile" ;;
4421 "tests/adv-test/Makefile") CONFIG_FILES="$CONFIG_FILES tests/adv-test/Makefile" ;;
4422
4423 *) { { echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
4424 echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
4425 { (exit 1); exit 1; }; };;
4426 esac
4427 done
4428
4429
4430 # If the user did not use the arguments to specify the items to instantiate,
4431 # then the envvar interface is used. Set only those that are not.
4432 # We use the long form for the default assignment because of an extremely
4433 # bizarre bug on SunOS 4.1.3.
4434 if $ac_need_defaults; then
4435 test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
4436 test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
4437 fi
4438
4439 # Have a temporary directory for convenience. Make it in the build tree
4440 # simply because there is no reason against having it here, and in addition,
4441 # creating and moving files from /tmp can sometimes cause problems.
4442 # Hook for its removal unless debugging.
4443 # Note that there is a small window in which the directory will not be cleaned:
4444 # after its creation but before its name has been assigned to `$tmp'.
4445 $debug ||
4446 {
4447 tmp=
4448 trap 'exit_status=$?
4449 { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
4450 ' 0
4451 trap '{ (exit 1); exit 1; }' 1 2 13 15
4452 }
4453 # Create a (secure) tmp directory for tmp files.
4454
4455 {
4456 tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
4457 test -n "$tmp" && test -d "$tmp"
4458 } ||
4459 {
4460 tmp=./conf$$-$RANDOM
4461 (umask 077 && mkdir "$tmp")
4462 } ||
4463 {
4464 echo "$me: cannot create a temporary directory in ." >&2
4465 { (exit 1); exit 1; }
4466 }
4467
4468 #
4469 # Set up the sed scripts for CONFIG_FILES section.
4470 #
4471
4472 # No need to generate the scripts if there are no CONFIG_FILES.
4473 # This happens for instance when ./config.status config.h
4474 if test -n "$CONFIG_FILES"; then
4475
4476 _ACEOF
4477
4478
4479
4480 ac_delim='%!_!# '
4481 for ac_last_try in false false false false false :; do
4482 cat >conf$$subs.sed <<_ACEOF
4483 SHELL!$SHELL$ac_delim
4484 PATH_SEPARATOR!$PATH_SEPARATOR$ac_delim
4485 PACKAGE_NAME!$PACKAGE_NAME$ac_delim
4486 PACKAGE_TARNAME!$PACKAGE_TARNAME$ac_delim
4487 PACKAGE_VERSION!$PACKAGE_VERSION$ac_delim
4488 PACKAGE_STRING!$PACKAGE_STRING$ac_delim
4489 PACKAGE_BUGREPORT!$PACKAGE_BUGREPORT$ac_delim
4490 exec_prefix!$exec_prefix$ac_delim
4491 prefix!$prefix$ac_delim
4492 program_transform_name!$program_transform_name$ac_delim
4493 bindir!$bindir$ac_delim
4494 sbindir!$sbindir$ac_delim
4495 libexecdir!$libexecdir$ac_delim
4496 datarootdir!$datarootdir$ac_delim
4497 datadir!$datadir$ac_delim
4498 sysconfdir!$sysconfdir$ac_delim
4499 sharedstatedir!$sharedstatedir$ac_delim
4500 localstatedir!$localstatedir$ac_delim
4501 includedir!$includedir$ac_delim
4502 oldincludedir!$oldincludedir$ac_delim
4503 docdir!$docdir$ac_delim
4504 infodir!$infodir$ac_delim
4505 htmldir!$htmldir$ac_delim
4506 dvidir!$dvidir$ac_delim
4507 pdfdir!$pdfdir$ac_delim
4508 psdir!$psdir$ac_delim
4509 libdir!$libdir$ac_delim
4510 localedir!$localedir$ac_delim
4511 mandir!$mandir$ac_delim
4512 DEFS!$DEFS$ac_delim
4513 ECHO_C!$ECHO_C$ac_delim
4514 ECHO_N!$ECHO_N$ac_delim
4515 ECHO_T!$ECHO_T$ac_delim
4516 LIBS!$LIBS$ac_delim
4517 build_alias!$build_alias$ac_delim
4518 host_alias!$host_alias$ac_delim
4519 target_alias!$target_alias$ac_delim
4520 build!$build$ac_delim
4521 build_cpu!$build_cpu$ac_delim
4522 build_vendor!$build_vendor$ac_delim
4523 build_os!$build_os$ac_delim
4524 host!$host$ac_delim
4525 host_cpu!$host_cpu$ac_delim
4526 host_vendor!$host_vendor$ac_delim
4527 host_os!$host_os$ac_delim
4528 target!$target$ac_delim
4529 target_cpu!$target_cpu$ac_delim
4530 target_vendor!$target_vendor$ac_delim
4531 target_os!$target_os$ac_delim
4532 INSTALL_PROGRAM!$INSTALL_PROGRAM$ac_delim
4533 INSTALL_SCRIPT!$INSTALL_SCRIPT$ac_delim
4534 INSTALL_DATA!$INSTALL_DATA$ac_delim
4535 CYGPATH_W!$CYGPATH_W$ac_delim
4536 PACKAGE!$PACKAGE$ac_delim
4537 VERSION!$VERSION$ac_delim
4538 ACLOCAL!$ACLOCAL$ac_delim
4539 AUTOCONF!$AUTOCONF$ac_delim
4540 AUTOMAKE!$AUTOMAKE$ac_delim
4541 AUTOHEADER!$AUTOHEADER$ac_delim
4542 MAKEINFO!$MAKEINFO$ac_delim
4543 install_sh!$install_sh$ac_delim
4544 STRIP!$STRIP$ac_delim
4545 INSTALL_STRIP_PROGRAM!$INSTALL_STRIP_PROGRAM$ac_delim
4546 mkdir_p!$mkdir_p$ac_delim
4547 AWK!$AWK$ac_delim
4548 SET_MAKE!$SET_MAKE$ac_delim
4549 am__leading_dot!$am__leading_dot$ac_delim
4550 AMTAR!$AMTAR$ac_delim
4551 am__tar!$am__tar$ac_delim
4552 am__untar!$am__untar$ac_delim
4553 PDB2PQR_VERSION!$PDB2PQR_VERSION$ac_delim
4554 CXX!$CXX$ac_delim
4555 CXXFLAGS!$CXXFLAGS$ac_delim
4556 LDFLAGS!$LDFLAGS$ac_delim
4557 CPPFLAGS!$CPPFLAGS$ac_delim
4558 ac_ct_CXX!$ac_ct_CXX$ac_delim
4559 EXEEXT!$EXEEXT$ac_delim
4560 OBJEXT!$OBJEXT$ac_delim
4561 DEPDIR!$DEPDIR$ac_delim
4562 am__include!$am__include$ac_delim
4563 am__quote!$am__quote$ac_delim
4564 AMDEP_TRUE!$AMDEP_TRUE$ac_delim
4565 AMDEP_FALSE!$AMDEP_FALSE$ac_delim
4566 AMDEPBACKSLASH!$AMDEPBACKSLASH$ac_delim
4567 CXXDEPMODE!$CXXDEPMODE$ac_delim
4568 am__fastdepCXX_TRUE!$am__fastdepCXX_TRUE$ac_delim
4569 am__fastdepCXX_FALSE!$am__fastdepCXX_FALSE$ac_delim
4570 py_path!$py_path$ac_delim
4571 PY_SHARED!$PY_SHARED$ac_delim
4572 PY_LDFLAGS!$PY_LDFLAGS$ac_delim
4573 PY_HEADER!$PY_HEADER$ac_delim
4574 PY_FLAGS!$PY_FLAGS$ac_delim
4575 PY_CFLAGS!$PY_CFLAGS$ac_delim
4576 PDB2PQR_SUBDIRS!$PDB2PQR_SUBDIRS$ac_delim
4577 URL!$URL$ac_delim
4578 install_dir_var!$install_dir_var$ac_delim
4579 website_install_var!$website_install_var$ac_delim
4580 _ACEOF
4581
4582 if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then
4583 break
4584 elif $ac_last_try; then
4585 { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
4586 echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
4587 { (exit 1); exit 1; }; }
4588 else
4589 ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
4590 fi
4591 done
4592
4593 ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
4594 if test -n "$ac_eof"; then
4595 ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
4596 ac_eof=`expr $ac_eof + 1`
4597 fi
4598
4599 cat >>$CONFIG_STATUS <<_ACEOF
4600 cat >"\$tmp/subs-1.sed" <<\CEOF$ac_eof
4601 /@[a-zA-Z_][a-zA-Z_0-9]*@/!b
4602 _ACEOF
4603 sed '
4604 s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
4605 s/^/s,@/; s/!/@,|#_!!_#|/
4606 :n
4607 t n
4608 s/'"$ac_delim"'$/,g/; t
4609 s/$/\\/; p
4610 N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
4611 ' >>$CONFIG_STATUS <conf$$subs.sed
4612 rm -f conf$$subs.sed
4613 cat >>$CONFIG_STATUS <<_ACEOF
4614 CEOF$ac_eof
4615 _ACEOF
4616
4617
4618 ac_delim='%!_!# '
4619 for ac_last_try in false false false false false :; do
4620 cat >conf$$subs.sed <<_ACEOF
4621 action_install_var!$action_install_var$ac_delim
4622 with_propka!$with_propka$ac_delim
4623 with_pdb2pka!$with_pdb2pka$ac_delim
4624 LIBOBJS!$LIBOBJS$ac_delim
4625 LTLIBOBJS!$LTLIBOBJS$ac_delim
4626 _ACEOF
4627
4628 if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 5; then
4629 break
4630 elif $ac_last_try; then
4631 { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
4632 echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
4633 { (exit 1); exit 1; }; }
4634 else
4635 ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
4636 fi
4637 done
4638
4639 ac_eof=`sed -n '/^CEOF[0-9]*$/s/CEOF/0/p' conf$$subs.sed`
4640 if test -n "$ac_eof"; then
4641 ac_eof=`echo "$ac_eof" | sort -nru | sed 1q`
4642 ac_eof=`expr $ac_eof + 1`
4643 fi
4644
4645 cat >>$CONFIG_STATUS <<_ACEOF
4646 cat >"\$tmp/subs-2.sed" <<\CEOF$ac_eof
4647 /@[a-zA-Z_][a-zA-Z_0-9]*@/!b end
4648 _ACEOF
4649 sed '
4650 s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g
4651 s/^/s,@/; s/!/@,|#_!!_#|/
4652 :n
4653 t n
4654 s/'"$ac_delim"'$/,g/; t
4655 s/$/\\/; p
4656 N; s/^.*\n//; s/[,\\&]/\\&/g; s/@/@|#_!!_#|/g; b n
4657 ' >>$CONFIG_STATUS <conf$$subs.sed
4658 rm -f conf$$subs.sed
4659 cat >>$CONFIG_STATUS <<_ACEOF
4660 :end
4661 s/|#_!!_#|//g
4662 CEOF$ac_eof
4663 _ACEOF
4664
4665
4666 # VPATH may cause trouble with some makes, so we remove $(srcdir),
4667 # ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
4668 # trailing colons and then remove the whole line if VPATH becomes empty
4669 # (actually we leave an empty line to preserve line numbers).
4670 if test "x$srcdir" = x.; then
4671 ac_vpsub='/^[ ]*VPATH[ ]*=/{
4672 s/:*\$(srcdir):*/:/
4673 s/:*\${srcdir}:*/:/
4674 s/:*@srcdir@:*/:/
4675 s/^\([^=]*=[ ]*\):*/\1/
4676 s/:*$//
4677 s/^[^=]*=[ ]*$//
4678 }'
4679 fi
4680
4681 cat >>$CONFIG_STATUS <<\_ACEOF
4682 fi # test -n "$CONFIG_FILES"
4683
4684
4685 for ac_tag in :F $CONFIG_FILES :C $CONFIG_COMMANDS
4686 do
4687 case $ac_tag in
4688 :[FHLC]) ac_mode=$ac_tag; continue;;
4689 esac
4690 case $ac_mode$ac_tag in
4691 :[FHL]*:*);;
4692 :L* | :C*:*) { { echo "$as_me:$LINENO: error: Invalid tag $ac_tag." >&5
4693 echo "$as_me: error: Invalid tag $ac_tag." >&2;}
4694 { (exit 1); exit 1; }; };;
4695 :[FH]-) ac_tag=-:-;;
4696 :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
4697 esac
4698 ac_save_IFS=$IFS
4699 IFS=:
4700 set x $ac_tag
4701 IFS=$ac_save_IFS
4702 shift
4703 ac_file=$1
4704 shift
4705
4706 case $ac_mode in
4707 :L) ac_source=$1;;
4708 :[FH])
4709 ac_file_inputs=
4710 for ac_f
4711 do
4712 case $ac_f in
4713 -) ac_f="$tmp/stdin";;
4714 *) # Look for the file first in the build tree, then in the source tree
4715 # (if the path is not absolute). The absolute path cannot be DOS-style,
4716 # because $ac_f cannot contain `:'.
4717 test -f "$ac_f" ||
4718 case $ac_f in
4719 [\\/$]*) false;;
4720 *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
4721 esac ||
4722 { { echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
4723 echo "$as_me: error: cannot find input file: $ac_f" >&2;}
4724 { (exit 1); exit 1; }; };;
4725 esac
4726 ac_file_inputs="$ac_file_inputs $ac_f"
4727 done
4728
4729 # Let's still pretend it is `configure' which instantiates (i.e., don't
4730 # use $as_me), people would be surprised to read:
4731 # /* config.h. Generated by config.status. */
4732 configure_input="Generated from "`IFS=:
4733 echo $* | sed 's|^[^:]*/||;s|:[^:]*/|, |g'`" by configure."
4734 if test x"$ac_file" != x-; then
4735 configure_input="$ac_file. $configure_input"
4736 { echo "$as_me:$LINENO: creating $ac_file" >&5
4737 echo "$as_me: creating $ac_file" >&6;}
4738 fi
4739
4740 case $ac_tag in
4741 *:-:* | *:-) cat >"$tmp/stdin";;
4742 esac
4743 ;;
4744 esac
4745
4746 ac_dir=`$as_dirname -- "$ac_file" ||
4747 $as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
4748 X"$ac_file" : 'X\(//\)[^/]' \| \
4749 X"$ac_file" : 'X\(//\)$' \| \
4750 X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
4751 echo X"$ac_file" |
4752 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
4753 s//\1/
4754 q
4755 }
4756 /^X\(\/\/\)[^/].*/{
4757 s//\1/
4758 q
4759 }
4760 /^X\(\/\/\)$/{
4761 s//\1/
4762 q
4763 }
4764 /^X\(\/\).*/{
4765 s//\1/
4766 q
4767 }
4768 s/.*/./; q'`
4769 { as_dir="$ac_dir"
4770 case $as_dir in #(
4771 -*) as_dir=./$as_dir;;
4772 esac
4773 test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
4774 as_dirs=
4775 while :; do
4776 case $as_dir in #(
4777 *\'*) as_qdir=`echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #(
4778 *) as_qdir=$as_dir;;
4779 esac
4780 as_dirs="'$as_qdir' $as_dirs"
4781 as_dir=`$as_dirname -- "$as_dir" ||
4782 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
4783 X"$as_dir" : 'X\(//\)[^/]' \| \
4784 X"$as_dir" : 'X\(//\)$' \| \
4785 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
4786 echo X"$as_dir" |
4787 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
4788 s//\1/
4789 q
4790 }
4791 /^X\(\/\/\)[^/].*/{
4792 s//\1/
4793 q
4794 }
4795 /^X\(\/\/\)$/{
4796 s//\1/
4797 q
4798 }
4799 /^X\(\/\).*/{
4800 s//\1/
4801 q
4802 }
4803 s/.*/./; q'`
4804 test -d "$as_dir" && break
4805 done
4806 test -z "$as_dirs" || eval "mkdir $as_dirs"
4807 } || test -d "$as_dir" || { { echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
4808 echo "$as_me: error: cannot create directory $as_dir" >&2;}
4809 { (exit 1); exit 1; }; }; }
4810 ac_builddir=.
4811
4812 case "$ac_dir" in
4813 .) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
4814 *)
4815 ac_dir_suffix=/`echo "$ac_dir" | sed 's,^\.[\\/],,'`
4816 # A ".." for each directory in $ac_dir_suffix.
4817 ac_top_builddir_sub=`echo "$ac_dir_suffix" | sed 's,/[^\\/]*,/..,g;s,/,,'`
4818 case $ac_top_builddir_sub in
4819 "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
4820 *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
4821 esac ;;
4822 esac
4823 ac_abs_top_builddir=$ac_pwd
4824 ac_abs_builddir=$ac_pwd$ac_dir_suffix
4825 # for backward compatibility:
4826 ac_top_builddir=$ac_top_build_prefix
4827
4828 case $srcdir in
4829 .) # We are building in place.
4830 ac_srcdir=.
4831 ac_top_srcdir=$ac_top_builddir_sub
4832 ac_abs_top_srcdir=$ac_pwd ;;
4833 [\\/]* | ?:[\\/]* ) # Absolute name.
4834 ac_srcdir=$srcdir$ac_dir_suffix;
4835 ac_top_srcdir=$srcdir
4836 ac_abs_top_srcdir=$srcdir ;;
4837 *) # Relative name.
4838 ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
4839 ac_top_srcdir=$ac_top_build_prefix$srcdir
4840 ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
4841 esac
4842 ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
4843
4844
4845 case $ac_mode in
4846 :F)
4847 #
4848 # CONFIG_FILE
4849 #
4850
4851 case $INSTALL in
4852 [\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
4853 *) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
4854 esac
4855 _ACEOF
4856
4857 cat >>$CONFIG_STATUS <<\_ACEOF
4858 # If the template does not know about datarootdir, expand it.
4859 # FIXME: This hack should be removed a few years after 2.60.
4860 ac_datarootdir_hack=; ac_datarootdir_seen=
4861
4862 case `sed -n '/datarootdir/ {
4863 p
4864 q
4865 }
4866 /@datadir@/p
4867 /@docdir@/p
4868 /@infodir@/p
4869 /@localedir@/p
4870 /@mandir@/p
4871 ' $ac_file_inputs` in
4872 *datarootdir*) ac_datarootdir_seen=yes;;
4873 *@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
4874 { echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
4875 echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
4876 _ACEOF
4877 cat >>$CONFIG_STATUS <<_ACEOF
4878 ac_datarootdir_hack='
4879 s&@datadir@&$datadir&g
4880 s&@docdir@&$docdir&g
4881 s&@infodir@&$infodir&g
4882 s&@localedir@&$localedir&g
4883 s&@mandir@&$mandir&g
4884 s&\\\${datarootdir}&$datarootdir&g' ;;
4885 esac
4886 _ACEOF
4887
4888 # Neutralize VPATH when `$srcdir' = `.'.
4889 # Shell code in configure.ac might set extrasub.
4890 # FIXME: do we really want to maintain this feature?
4891 cat >>$CONFIG_STATUS <<_ACEOF
4892 sed "$ac_vpsub
4893 $extrasub
4894 _ACEOF
4895 cat >>$CONFIG_STATUS <<\_ACEOF
4896 :t
4897 /@[a-zA-Z_][a-zA-Z_0-9]*@/!b
4898 s&@configure_input@&$configure_input&;t t
4899 s&@top_builddir@&$ac_top_builddir_sub&;t t
4900 s&@srcdir@&$ac_srcdir&;t t
4901 s&@abs_srcdir@&$ac_abs_srcdir&;t t
4902 s&@top_srcdir@&$ac_top_srcdir&;t t
4903 s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
4904 s&@builddir@&$ac_builddir&;t t
4905 s&@abs_builddir@&$ac_abs_builddir&;t t
4906 s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
4907 s&@INSTALL@&$ac_INSTALL&;t t
4908 $ac_datarootdir_hack
4909 " $ac_file_inputs | sed -f "$tmp/subs-1.sed" | sed -f "$tmp/subs-2.sed" >$tmp/out
4910
4911 test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
4912 { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
4913 { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
4914 { echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
4915 which seems to be undefined. Please make sure it is defined." >&5
4916 echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
4917 which seems to be undefined. Please make sure it is defined." >&2;}
4918
4919 rm -f "$tmp/stdin"
4920 case $ac_file in
4921 -) cat "$tmp/out"; rm -f "$tmp/out";;
4922 *) rm -f "$ac_file"; mv "$tmp/out" $ac_file;;
4923 esac
4924 ;;
4925
4926
4927 :C) { echo "$as_me:$LINENO: executing $ac_file commands" >&5
4928 echo "$as_me: executing $ac_file commands" >&6;}
4929 ;;
4930 esac
4931
4932
4933 case $ac_file$ac_mode in
4934 "depfiles":C) test x"$AMDEP_TRUE" != x"" || for mf in $CONFIG_FILES; do
4935 # Strip MF so we end up with the name of the file.
4936 mf=`echo "$mf" | sed -e 's/:.*$//'`
4937 # Check whether this is an Automake generated Makefile or not.
4938 # We used to match only the files named `Makefile.in', but
4939 # some people rename them; so instead we look at the file content.
4940 # Grep'ing the first line is not enough: some people post-process
4941 # each Makefile.in and add a new line on top of each file to say so.
4942 # So let's grep whole file.
4943 if grep '^#.*generated by automake' $mf > /dev/null 2>&1; then
4944 dirpart=`$as_dirname -- "$mf" ||
4945 $as_expr X"$mf" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
4946 X"$mf" : 'X\(//\)[^/]' \| \
4947 X"$mf" : 'X\(//\)$' \| \
4948 X"$mf" : 'X\(/\)' \| . 2>/dev/null ||
4949 echo X"$mf" |
4950 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
4951 s//\1/
4952 q
4953 }
4954 /^X\(\/\/\)[^/].*/{
4955 s//\1/
4956 q
4957 }
4958 /^X\(\/\/\)$/{
4959 s//\1/
4960 q
4961 }
4962 /^X\(\/\).*/{
4963 s//\1/
4964 q
4965 }
4966 s/.*/./; q'`
4967 else
4968 continue
4969 fi
4970 # Extract the definition of DEPDIR, am__include, and am__quote
4971 # from the Makefile without running `make'.
4972 DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
4973 test -z "$DEPDIR" && continue
4974 am__include=`sed -n 's/^am__include = //p' < "$mf"`
4975 test -z "am__include" && continue
4976 am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
4977 # When using ansi2knr, U may be empty or an underscore; expand it
4978 U=`sed -n 's/^U = //p' < "$mf"`
4979 # Find all dependency output files, they are included files with
4980 # $(DEPDIR) in their names. We invoke sed twice because it is the
4981 # simplest approach to changing $(DEPDIR) to its actual value in the
4982 # expansion.
4983 for file in `sed -n "
4984 s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \
4985 sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
4986 # Make sure the directory exists.
4987 test -f "$dirpart/$file" && continue
4988 fdir=`$as_dirname -- "$file" ||
4989 $as_expr X"$file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
4990 X"$file" : 'X\(//\)[^/]' \| \
4991 X"$file" : 'X\(//\)$' \| \
4992 X"$file" : 'X\(/\)' \| . 2>/dev/null ||
4993 echo X"$file" |
4994 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
4995 s//\1/
4996 q
4997 }
4998 /^X\(\/\/\)[^/].*/{
4999 s//\1/
5000 q
5001 }
5002 /^X\(\/\/\)$/{
5003 s//\1/
5004 q
5005 }
5006 /^X\(\/\).*/{
5007 s//\1/
5008 q
5009 }
5010 s/.*/./; q'`
5011 { as_dir=$dirpart/$fdir
5012 case $as_dir in #(
5013 -*) as_dir=./$as_dir;;
5014 esac
5015 test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
5016 as_dirs=
5017 while :; do
5018 case $as_dir in #(
5019 *\'*) as_qdir=`echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #(
5020 *) as_qdir=$as_dir;;
5021 esac
5022 as_dirs="'$as_qdir' $as_dirs"
5023 as_dir=`$as_dirname -- "$as_dir" ||
5024 $as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
5025 X"$as_dir" : 'X\(//\)[^/]' \| \
5026 X"$as_dir" : 'X\(//\)$' \| \
5027 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
5028 echo X"$as_dir" |
5029 sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
5030 s//\1/
5031 q
5032 }
5033 /^X\(\/\/\)[^/].*/{
5034 s//\1/
5035 q
5036 }
5037 /^X\(\/\/\)$/{
5038 s//\1/
5039 q
5040 }
5041 /^X\(\/\).*/{
5042 s//\1/
5043 q
5044 }
5045 s/.*/./; q'`
5046 test -d "$as_dir" && break
5047 done
5048 test -z "$as_dirs" || eval "mkdir $as_dirs"
5049 } || test -d "$as_dir" || { { echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
5050 echo "$as_me: error: cannot create directory $as_dir" >&2;}
5051 { (exit 1); exit 1; }; }; }
5052 # echo "creating $dirpart/$file"
5053 echo '# dummy' > "$dirpart/$file"
5054 done
5055 done
5056 ;;
5057
5058 esac
5059 done # for ac_tag
5060
5061
5062 { (exit 0); exit 0; }
5063 _ACEOF
5064 chmod +x $CONFIG_STATUS
5065 ac_clean_files=$ac_clean_files_save
5066
5067
5068 # configure is writing to config.log, and then calls config.status.
5069 # config.status does its own redirection, appending to config.log.
5070 # Unfortunately, on DOS this fails, as config.log is still kept open
5071 # by configure, so config.status won't be able to write to it; its
5072 # output is simply discarded. So we exec the FD to /dev/null,
5073 # effectively closing config.log, so it can be properly (re)opened and
5074 # appended to by config.status. When coming back to configure, we
5075 # need to make the FD available again.
5076 if test "$no_create" != yes; then
5077 ac_cs_success=:
5078 ac_config_status_args=
5079 test "$silent" = yes &&
5080 ac_config_status_args="$ac_config_status_args --quiet"
5081 exec 5>/dev/null
5082 $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
5083 exec 5>>config.log
5084 # Use ||, not &&, to avoid exiting from the if with $? = 1, which
5085 # would make configure fail if this is the last instruction.
5086 $ac_cs_success || { (exit 1); exit 1; }
5087 fi
5088
5089 echo
5090 echo ---------------------------------------------------------------------------------------
5091 { echo "$as_me:$LINENO: result: Please run \"make\" followed by \"make install\" to complete the installation. You may also run \"make test\" or \"make adv-test\". " >&5
5092 echo "${ECHO_T}Please run \"make\" followed by \"make install\" to complete the installation. You may also run \"make test\" or \"make adv-test\". " >&6; }
5093 echo
5094 fi
5095
5096
5097 USER=`whoami`
5098
5099 echo " ========================"
5100 echo " Configuration Parameters"
5101 echo " ========================"
5102 echo
5103 echo "User ID: ${USER}"
5104 echo "Version: ${VERSION}"
5105 echo "Install Dir: ${prefix}"
5106 echo "propka: ${with_propka}"
5107 echo "pdb2pka: ${with_pdb2pka}"
5108 echo "PY_CFLAGS: ${PY_CFLAGS}"
5109 echo
5110 #echo " ---------------"
5111 #echo " Based on SRCDIR"
5112 #echo " ---------------"
5113 #echo
5114 #echo "Note: You cannot access the server if SRCPATH is not a web viewable directory"
5115 #echo
5116 #echo "SRCPATH (location of your source directory): ${srcpath}"
5117 #echo "WEBSITE (path to the website directory): ${website}"
5118 #echo "PDB2PQR_CGI (path to pdb2pqr.cgi): ${pdb2pqr_cgi}"
5119 #echo
5120 #echo " ------------------------------"
5121 #echo " Based on --preifx / INSTALLDIR"
5122 #echo " ------------------------------"
5123 #echo
5124 #echo "Note: You cannot access the server if INSTALLDIR is not a web viewable directory"
5125 #echo
5126
5127 if test $prefix = `pwd` ; then
5128 echo "WEBSITE (path to the website directory): ${website}"
5129 echo " (WEBSITE can be changed with the --with-url option)"
5130 echo "PDB2PQR_CGI (path to pdb2pqr.cgi): ${pdb2pqr_cgi}"
5131 echo "OPALURL (url to the pdb2pqr opal service): ${OPALURL}"
5132 else
5133 echo "WEBSITE (path to the website directory): ${website_install}"
5134 echo " (WEBSITE can be changed with the --with-url option)"
5135 echo "PDB2PQR_CGI (path to pdb2pqr.cgi): ${pdb2pqr_cgi_install}"
5136 if test "$OPALURL" = ""; then
5137 echo "PDB2PQR jobs will be forked on the server"
5138 echo "MAX_ATOMS (max number of atoms in a protein): ${MAX_ATOMS}"
5139 else
5140 echo "OPALURL (url to the pdb2pqr opal service): ${OPALURL}"
5141 fi
5142 echo
5143 fi
5144 last_website_install=$last_website_install
5145
5146 last_prefix=$last_prefix
5147
5148
5149 echo ${prefix} > prefix_file
5150 first=`awk -F"/" '{ print $2 }' prefix_file`
5151 second=`awk -F"/" '{ print $3 }' prefix_file`
5152 third=`awk -F"/" '{ print $4 }' prefix_file`
5153 rm -f prefix_file
5154
5155 if test `whoami` = "root" ; then
5156 if test ${first} != "var" || test ${second} != "www" || test ${third} != "html" ; then
5157 echo
5158 echo "*** Warning: The install directory is not inside /var/www/html/"
5159 echo " A symbolic link will be created when you run \"make install\""
5160 elif test "${last_website_install}" != "${last_prefix}" ; then
5161 echo
5162 echo "*** Warning: The last directory of your prefix = ${last_prefix}"
5163 echo " The last directory of your URL = ${last_website_install}"
5164 echo " It's recommended that they are the same. You may run configure again with a different set of --prefix and --with-url"
5165 echo " Or a symbolic link will be created when you run \"make install\", and you will be able to run the server from the URL you specified, but not the URL based on --prefix"
5166 fi
5167 else
5168 echo As a regular user, you must ask your system administrator to create a symbolic link that enables you to view $URL after you run \"make install\"
5169 fi
5170
5171 if test "$zsi_pyxml_install" = "true" ; then
5172 echo Since you are not root, PYXML and/or ZSI have been installed in your home directory
5173 echo "You will need to do 'echo export PYTHONPATH=\${PYTHONPATH}:${prefix}lib/python$PY_VERSION/site-packages/: >>~/.bashrc'"
5174 fi

Properties

Name Value
svn:executable *