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Revision: 1.4
Committed: Mon May 27 22:08:21 2002 UTC (13 years, 11 months ago) by gaou
Branch: MAIN
CVS Tags: HEAD_NEW, HEAD
Changes since 1.3: +1 -1 lines
Log Message:
doc revised

Line File contents
1 ===========================================
2 G-language Genome Analysis Environment
3 version 1.0.2 BETA
4
5 Copyright (C) 2001-2002 G-language Project
6 Institute for Advanced Biosciences
7 Keio University
8
9 http://www.g-language.org/
10 ===========================================
11
12 This document is written by Kazuharu Arakawa <gaou@g-language.org>
13
14
15 Thank you for trying the G-language Genome Analysis Environment.
16 Please note that we are still in the beta testing stage.
17
18 This software package is distributed under GPL. Please see the file
19 COPYING for details before you go on to installation.
20
21
22 #############################################################
23 Binary Package
24 #############################################################
25
26 Linux:
27
28 Requirements:
29 RedHat 7.x Linux
30
31 Procedure:
32 tar -xvfz G-language_GAE_x.x.x_beta_linux.tar.gz
33 cd g-language
34 su
35 sh INSTALL.sh
36
37 If you have rpm version < 4.x and different Perl path or version, install manually from SRPMS.
38 Just type "rpm --rebuild SRPMS/*" to create RPMS, and then "rpm -i ,/usr/src/redhat/RPMS/i386/*"
39 to install.
40
41 Then copy appropriate files in asimo and glang folders in appropriate places.
42 See INSTALL.sh for details
43
44 Windows:
45 Double click on "Setup.exe" as administrator and follow the regular procedures.
46 Uninstall Perl if you already have it installed.
47 Also, check the part "Trouble Shooting".
48
49
50 #############################################################
51 TROUBLE SHOOTING
52 #############################################################
53
54 Linux:
55 no problem known.
56
57 Windows XP:
58 no problem known.
59
60 Windows 95/98/Me
61 If G-language GAE does not start up, make sure the following line
62 is in C:\Autoexec.bat and reboot.
63 SET PATH=%PATH%;C:\G-language;C:\perl5\bin;
64
65 Windows 2000
66 If G-language GAE does not start up, check to see the path to
67 \perl5\bin;\G-language
68 exists in the environment variable at the property window of
69 "My Computer".
70 This apparantly is a windows bug, since this problem will be
71 solved just by clicking "OK" in the Environment Variable Window
72 without changing anything.
73
74 If you encounter other problems, please notify us at info@g-language.org
75 Our website http://www.g-language.org/ also provides a set of documentation,
76 that can help.
77
78
79 #############################################################
80 CVS Package
81 #############################################################
82
83 G-language Genome Analysis Environment requires the following third-party
84 packages.
85
86 gnuplot (>= 3.7.1 http://www.gnuplot.org)
87 perl Chart::Graph (>= 2-7 http://www.cpan.org)
88 perl GD (>= 1.38 http://www.cpan.org)
89 perl GD::Graph (>= 1.33 http://www.cpan.org)
90 perl GD::TextUtil (>= 0.80 http://www.cpan.org)
91 perl Statistics::Descriptive (>= 2.4 http://www.cpan.org)
92 perl bioperl (>= 1.0 http://www.cpan.org)
93 perl WxPerl (>= 0.7 http://wxperl.sourceforge.net)
94 wxGTK (>= 2.2.9 http://www.wxwindows.org)
95
96 readline (>= 4.1 http://www.rpmfind.net) required by gnuplot
97 perl IO::String (>= 1.01 http://www/cpan.org) required by bioperl
98
99
100 After installing the above packages, the regular procedure
101
102 # cd g-language
103 # perl Makefile.PL
104 # make
105 # su
106 # make install
107
108 will install G-language core libraries in Perl.
109 then
110
111 # cp -r wxWindows/src/bmp /usr/local/src
112 # cp -r wxWindows/bin/* /usr/local/bin
113
114 to install Graphical User Interfaces.
115
116 for Windows, use binaries in /wxWindows/windows/
117
118 gcf files are in gcf/ directory, and the G-languge GAE executable can be run by
119 # glang &
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