Revision
57 -
Directory Listing
Modified
Thu Sep 8 11:52:37 2011 UTC
(9 years, 6 months ago)
by
gpertea
wip
Revision
56 -
Directory Listing
Modified
Thu Sep 8 05:47:09 2011 UTC
(9 years, 6 months ago)
by
gpertea
RPS20P29, ENSG00000241828 not collapsing
Revision
55 -
Directory Listing
Modified
Thu Sep 8 05:46:53 2011 UTC
(9 years, 6 months ago)
by
gpertea
RPS20P29, ENSG00000241828 not collapsing
Revision
54 -
Directory Listing
Modified
Thu Sep 8 05:46:16 2011 UTC
(9 years, 6 months ago)
by
gpertea
debug RPS20P29 ENSG00000241828 not collapsing
Revision
53 -
Directory Listing
Modified
Thu Sep 8 02:43:56 2011 UTC
(9 years, 6 months ago)
by
gpertea
Revision
52 -
Directory Listing
Modified
Thu Sep 8 02:43:30 2011 UTC
(9 years, 6 months ago)
by
gpertea
reclass_XStrand fixed for 's' not code being reported if 'i' was found
Revision
51 -
Directory Listing
Modified
Thu Sep 8 01:02:11 2011 UTC
(9 years, 6 months ago)
by
gpertea
fix direct CDS segment given as the only subfeature
Revision
50 -
Directory Listing
Modified
Thu Sep 8 00:47:22 2011 UTC
(9 years, 6 months ago)
by
gpertea
fixed a loading bug when a CDS was given to a monoFeature() with a self-exon
Revision
49 -
Directory Listing
Modified
Wed Sep 7 16:26:02 2011 UTC
(9 years, 6 months ago)
by
gpertea
minor edits
Revision
48 -
Directory Listing
Modified
Wed Sep 7 16:07:32 2011 UTC
(9 years, 6 months ago)
by
gpertea
longest CDS is now kept on -MK containment
Revision
47 -
Directory Listing
Modified
Wed Sep 7 01:12:20 2011 UTC
(9 years, 6 months ago)
by
gpertea
when collapsing redundant transcripts, transfer CDS coords to the container if it doesn't have any
Revision
46 -
Directory Listing
Modified
Wed Sep 7 00:00:08 2011 UTC
(9 years, 6 months ago)
by
gpertea
fixed GStr[-2] bug
Revision
45 -
Directory Listing
Modified
Tue Sep 6 18:19:20 2011 UTC
(9 years, 6 months ago)
by
gpertea
added gfview files
Revision
44 -
Directory Listing
Modified
Tue Sep 6 18:15:55 2011 UTC
(9 years, 6 months ago)
by
gpertea
added gfview
Revision
43 -
Directory Listing
Modified
Tue Sep 6 17:41:50 2011 UTC
(9 years, 6 months ago)
by
gpertea
m
Revision
42 -
Directory Listing
Modified
Tue Sep 6 17:40:45 2011 UTC
(9 years, 6 months ago)
by
gpertea
minor edit
Revision
41 -
Directory Listing
Modified
Sat Aug 27 16:58:00 2011 UTC
(9 years, 6 months ago)
by
gpertea
added fix for fileExists() under MSVC
Revision
40 -
Directory Listing
Modified
Sat Aug 27 16:48:50 2011 UTC
(9 years, 6 months ago)
by
gpertea
added clview files and examples
Revision
39 -
Directory Listing
Modified
Sat Aug 27 15:50:52 2011 UTC
(9 years, 6 months ago)
by
gpertea
clview added
Revision
38 -
Directory Listing
Modified
Sat Aug 27 15:42:15 2011 UTC
(9 years, 6 months ago)
by
gpertea
Revision
37 -
Directory Listing
Modified
Mon Aug 22 16:17:34 2011 UTC
(9 years, 6 months ago)
by
gpertea
wip
Revision
36 -
Directory Listing
Modified
Mon Aug 22 15:56:21 2011 UTC
(9 years, 6 months ago)
by
gpertea
Revision
35 -
Directory Listing
Modified
Fri Aug 5 18:47:20 2011 UTC
(9 years, 7 months ago)
by
gpertea
wip
Revision
34 -
Directory Listing
Modified
Wed Aug 3 22:15:52 2011 UTC
(9 years, 7 months ago)
by
gpertea
wip segment_juncs
Revision
33 -
Directory Listing
Modified
Wed Aug 3 17:02:56 2011 UTC
(9 years, 7 months ago)
by
gpertea
wip conversion to SAM processing
Revision
32 -
Directory Listing
Modified
Tue Aug 2 22:04:47 2011 UTC
(9 years, 7 months ago)
by
gpertea
adding bam2fastx as recognized unpacker for .bam files
Revision
31 -
Directory Listing
Modified
Tue Aug 2 21:58:18 2011 UTC
(9 years, 7 months ago)
by
gpertea
trying to get rid of unspliced_bwt in Maps (replace by unspliced_sam)
Revision
30 -
Directory Listing
Modified
Tue Aug 2 21:25:50 2011 UTC
(9 years, 7 months ago)
by
gpertea
added SeqAn to tophat source pack
Revision
29 -
Directory Listing
Modified
Tue Aug 2 21:24:54 2011 UTC
(9 years, 7 months ago)
by
gpertea
adding tophat source work
Revision
28 -
Directory Listing
Modified
Tue Aug 2 21:23:26 2011 UTC
(9 years, 7 months ago)
by
gpertea
adding tophat_cpp dir
Revision
27 -
Directory Listing
Modified
Wed Jul 27 20:43:37 2011 UTC
(9 years, 7 months ago)
by
gpertea
Revision
26 -
Directory Listing
Modified
Wed Jul 27 19:39:27 2011 UTC
(9 years, 7 months ago)
by
gpertea
added missing gff_utils source
Revision
25 -
Directory Listing
Modified
Tue Jul 26 21:50:53 2011 UTC
(9 years, 7 months ago)
by
gpertea
Revision
24 -
Directory Listing
Modified
Tue Jul 26 21:46:39 2011 UTC
(9 years, 7 months ago)
by
gpertea
Revision
23 -
Directory Listing
Modified
Tue Jul 26 21:44:38 2011 UTC
(9 years, 7 months ago)
by
gpertea
adding misc scripts
Revision
22 -
Directory Listing
Modified
Tue Jul 26 21:43:45 2011 UTC
(9 years, 7 months ago)
by
gpertea
various scripts
Revision
21 -
Directory Listing
Modified
Mon Jul 18 22:35:05 2011 UTC
(9 years, 7 months ago)
by
gpertea
added recent fix for no TSS-cluster if different GeneID
Revision
20 -
Directory Listing
Modified
Mon Jul 18 21:08:36 2011 UTC
(9 years, 7 months ago)
by
gpertea
added cuffcompare sources
Revision
19 -
Directory Listing
Modified
Mon Jul 18 21:07:43 2011 UTC
(9 years, 7 months ago)
by
gpertea
mkdir cuffcompare
Revision
18 -
Directory Listing
Modified
Mon Jul 18 21:00:21 2011 UTC
(9 years, 7 months ago)
by
gpertea
added a few more source files, test code
Revision
17 -
Directory Listing
Modified
Mon Jul 18 20:57:05 2011 UTC
(9 years, 7 months ago)
by
gpertea
sync with local source
Revision
16 -
Directory Listing
Modified
Mon Jul 18 20:56:02 2011 UTC
(9 years, 7 months ago)
by
gpertea
sync with local source
Revision
15 -
Directory Listing
Modified
Mon Jul 18 20:53:45 2011 UTC
(9 years, 7 months ago)
by
gpertea
sync with local src
Revision
14 -
Directory Listing
Modified
Mon Jul 18 20:36:48 2011 UTC
(9 years, 7 months ago)
by
gpertea
added old trimpoly code just for archive
Revision
13 -
Directory Listing
Modified
Mon Jul 18 20:35:43 2011 UTC
(9 years, 7 months ago)
by
gpertea
sync with my local source
Revision
12 -
Directory Listing
Modified
Wed Jan 26 19:05:05 2011 UTC
(10 years, 1 month ago)
by
gpertea
added qv-threshold trimming
Revision
11 -
Directory Listing
Modified
Tue Mar 23 18:03:12 2010 UTC
(10 years, 11 months ago)
by
gpertea
update l5,l3 to defaults if no trimming is performed
Revision
10 -
Directory Listing
Modified
Tue Mar 23 17:46:56 2010 UTC
(10 years, 11 months ago)
by
gpertea
bugfix: prevent crash with -o option is not given
Revision
9 -
Directory Listing
Modified
Tue Mar 23 17:12:14 2010 UTC
(10 years, 11 months ago)
by
gpertea
fixed bug causing overtrimming
Revision
8 -
Directory Listing
Modified
Mon Mar 22 22:11:25 2010 UTC
(10 years, 11 months ago)
by
gpertea
added cdbfasta source files
Revision
7 -
Directory Listing
Modified
Mon Mar 22 22:08:51 2010 UTC
(10 years, 11 months ago)
by
gpertea
mkdir cdbfasta
Revision
6 -
Directory Listing
Modified
Mon Mar 22 22:07:27 2010 UTC
(10 years, 11 months ago)
by
gpertea
added gffread sources
Revision
5 -
Directory Listing
Modified
Mon Mar 22 22:06:27 2010 UTC
(10 years, 11 months ago)
by
gpertea
mkdir gffread
Revision
4 -
Directory Listing
Modified
Mon Mar 22 22:05:23 2010 UTC
(10 years, 11 months ago)
by
gpertea
initial commit
Revision
3 -
Directory Listing
Modified
Mon Mar 22 22:04:34 2010 UTC
(10 years, 11 months ago)
by
gpertea
mkdir
Revision
2 -
Directory Listing
Modified
Mon Mar 22 22:03:27 2010 UTC
(10 years, 11 months ago)
by
gpertea
added my gclib source files
Revision
1 -
Directory Listing
Added
Mon Mar 22 22:01:50 2010 UTC
(10 years, 11 months ago)
by
gpertea
import