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root/gclib/bamread/bamread.cpp
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# Line 51 | Line 51
51   int main(int argc, char *argv[])
52   {
53  
54 <    GArgs args(argc, argv, "fasta;fastq;gff;all;help;mapped-only;hAMGaqo:");
54 >    GArgs args(argc, argv, "fasta;fastq;gff;all;help;mapped-only;"
55 >        "hAMGaqo:");
56      args.printError(USAGE, true);
57      if (args.getOpt('h') || args.getOpt("help") || args.startNonOpt()==0) {
58        GMessage(USAGE);
59        return 1;
60        }
61 +    args.printCmdLine(stderr);
62  
63      all_reads=(args.getOpt('A') || args.getOpt("all"));
64      mapped_only=(args.getOpt('M') || args.getOpt("mapped-only"));

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