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root/gclib/cuffcompare/cuffcompare.cpp
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# Line 884 | Line 884
884       //check if it can be added to existing xconsensi
885       uint nfend=0;
886       uint nfstart=0;
887 +     /*
888       if (tsscl.Get(0)->tcons->getGeneID()!=NULL &&
889               c->tcons->getGeneID()!=NULL &&
890              strcmp(tsscl.Get(0)->tcons->getGeneID(), c->tcons->getGeneID()))
# Line 891 | Line 892
892          //FIXME: we might not want this if input files are not from Cufflinks
893          //       and they could simply lack proper GeneID
894            return false;
895 <            
895 >      */
896       if (c->tcons->strand=='-') {
897          //no, the first exons don't have to overlap
898          //if (!c->tcons->exons.Last()->overlap(fstart,fend)) return false;

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