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root/gclib/fqtrim/fqtrim.cpp
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Revision 189 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 23:08:53 2012 UTC (7 years, 7 months ago) by gpertea
File length: 48914 byte(s)
Diff to previous 187 , to selected 10
added -a option to control the minimum exact adaptor match to be trimmed at the ends

Revision 187 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 05:42:21 2012 UTC (7 years, 7 months ago) by gpertea
File length: 48278 byte(s)
Diff to previous 185 , to selected 10
fqtrim

Revision 185 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 22:05:42 2012 UTC (7 years, 7 months ago) by gpertea
File length: 44641 byte(s)
Diff to previous 183 , to selected 10

Revision 183 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:59:33 2012 UTC (7 years, 7 months ago) by gpertea
File length: 44373 byte(s)
Diff to previous 182 , to selected 10
works

Revision 182 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:33:27 2012 UTC (7 years, 7 months ago) by gpertea
File length: 44004 byte(s)
Diff to previous 180 , to selected 10

Revision 180 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:24:04 2012 UTC (7 years, 7 months ago) by gpertea
File length: 44059 byte(s)
Diff to previous 177 , to selected 10
works probably

Revision 177 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 07:10:32 2012 UTC (7 years, 7 months ago) by gpertea
File length: 43339 byte(s)
Diff to previous 175 , to selected 10
collectSeeds unified

Revision 175 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 03:46:59 2012 UTC (7 years, 7 months ago) by gpertea
File length: 43190 byte(s)
Diff to previous 172 , to selected 10

Revision 172 - (view) (annotate) - [select for diffs]
Modified Wed Feb 15 03:33:40 2012 UTC (7 years, 8 months ago) by gpertea
File length: 42690 byte(s)
Diff to previous 170 , to selected 10
wip fqtrim

Revision 170 - (view) (annotate) - [select for diffs]
Modified Tue Feb 14 22:35:51 2012 UTC (7 years, 8 months ago) by gpertea
File length: 42010 byte(s)
Diff to previous 108 , to selected 10
wip fqtrim

Revision 108 - (view) (annotate) - [select for diffs]
Modified Tue Oct 11 19:49:29 2011 UTC (8 years ago) by gpertea
File length: 41757 byte(s)
Diff to previous 105 , to selected 10
made more stringent on the 5' end, other tests and fixes

Revision 105 - (view) (annotate) - [select for diffs]
Modified Mon Oct 10 21:44:55 2011 UTC (8 years ago) by gpertea
File length: 41600 byte(s)
Diff to previous 103 , to selected 10
wip - works?

Revision 103 - (view) (annotate) - [select for diffs]
Modified Mon Oct 10 19:33:39 2011 UTC (8 years ago) by gpertea
File length: 41090 byte(s)
Diff to previous 102 , to selected 10
wip

Revision 102 - (view) (annotate) - [select for diffs]
Modified Fri Oct 7 21:44:59 2011 UTC (8 years ago) by gpertea
File length: 38427 byte(s)
Diff to previous 98 , to selected 10
wip

Revision 98 - (view) (annotate) - [select for diffs]
Modified Thu Oct 6 20:49:00 2011 UTC (8 years ago) by gpertea
File length: 46629 byte(s)
Diff to previous 94 , to selected 10
wip

Revision 94 - (view) (annotate) - [select for diffs]
Modified Tue Oct 4 21:27:35 2011 UTC (8 years ago) by gpertea
File length: 48809 byte(s)
Diff to previous 88 , to selected 10
wip

Revision 88 - (view) (annotate) - [select for diffs]
Modified Mon Oct 3 16:34:03 2011 UTC (8 years ago) by gpertea
File length: 54110 byte(s)
Diff to previous 76 , to selected 10
starting to add polyA/T trimming

Revision 76 - (view) (annotate) - [select for diffs]
Modified Tue Sep 27 12:37:02 2011 UTC (8 years ago) by gpertea
File length: 53160 byte(s)
Diff to previous 13 , to selected 10
u

Revision 13 - (view) (annotate) - [select for diffs]
Modified Mon Jul 18 20:35:43 2011 UTC (8 years, 2 months ago) by gpertea
File length: 52599 byte(s)
Diff to previous 12 , to selected 10
sync with my local source

Revision 12 - (view) (annotate) - [select for diffs]
Modified Wed Jan 26 19:05:05 2011 UTC (8 years, 8 months ago) by gpertea
File length: 41915 byte(s)
Diff to previous 11 , to selected 10
added qv-threshold trimming

Revision 11 - (view) (annotate) - [select for diffs]
Modified Tue Mar 23 18:03:12 2010 UTC (9 years, 6 months ago) by gpertea
File length: 24503 byte(s)
Diff to previous 10
update l5,l3 to defaults if no trimming is performed

Revision 10 - (view) (annotate) - [selected]
Modified Tue Mar 23 17:46:56 2010 UTC (9 years, 6 months ago) by gpertea
File length: 24465 byte(s)
Diff to previous 9
bugfix: prevent crash with -o option is not given

Revision 9 - (view) (annotate) - [select for diffs]
Modified Tue Mar 23 17:12:14 2010 UTC (9 years, 6 months ago) by gpertea
File length: 24432 byte(s)
Diff to previous 4 , to selected 10
fixed bug causing overtrimming

Revision 4 - (view) (annotate) - [select for diffs]
Added Mon Mar 22 22:05:23 2010 UTC (9 years, 6 months ago) by gpertea
File length: 23716 byte(s)
Diff to selected 10
initial commit

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