ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/fqtrim/fqtrim.cpp
Links to HEAD: (view) (annotate)
Sticky Revision:
Sort logs by:
Revision 189 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 23:08:53 2012 UTC (7 years, 6 months ago) by gpertea
File length: 48914 byte(s)
Diff to previous 187 , to selected 172
added -a option to control the minimum exact adaptor match to be trimmed at the ends

Revision 187 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 05:42:21 2012 UTC (7 years, 6 months ago) by gpertea
File length: 48278 byte(s)
Diff to previous 185 , to selected 172
fqtrim

Revision 185 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 22:05:42 2012 UTC (7 years, 6 months ago) by gpertea
File length: 44641 byte(s)
Diff to previous 183 , to selected 172

Revision 183 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:59:33 2012 UTC (7 years, 6 months ago) by gpertea
File length: 44373 byte(s)
Diff to previous 182 , to selected 172
works

Revision 182 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:33:27 2012 UTC (7 years, 6 months ago) by gpertea
File length: 44004 byte(s)
Diff to previous 180 , to selected 172

Revision 180 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:24:04 2012 UTC (7 years, 6 months ago) by gpertea
File length: 44059 byte(s)
Diff to previous 177 , to selected 172
works probably

Revision 177 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 07:10:32 2012 UTC (7 years, 6 months ago) by gpertea
File length: 43339 byte(s)
Diff to previous 175 , to selected 172
collectSeeds unified

Revision 175 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 03:46:59 2012 UTC (7 years, 6 months ago) by gpertea
File length: 43190 byte(s)
Diff to previous 172

Revision 172 - (view) (annotate) - [selected]
Modified Wed Feb 15 03:33:40 2012 UTC (7 years, 6 months ago) by gpertea
File length: 42690 byte(s)
Diff to previous 170
wip fqtrim

Revision 170 - (view) (annotate) - [select for diffs]
Modified Tue Feb 14 22:35:51 2012 UTC (7 years, 6 months ago) by gpertea
File length: 42010 byte(s)
Diff to previous 108 , to selected 172
wip fqtrim

Revision 108 - (view) (annotate) - [select for diffs]
Modified Tue Oct 11 19:49:29 2011 UTC (7 years, 10 months ago) by gpertea
File length: 41757 byte(s)
Diff to previous 105 , to selected 172
made more stringent on the 5' end, other tests and fixes

Revision 105 - (view) (annotate) - [select for diffs]
Modified Mon Oct 10 21:44:55 2011 UTC (7 years, 10 months ago) by gpertea
File length: 41600 byte(s)
Diff to previous 103 , to selected 172
wip - works?

Revision 103 - (view) (annotate) - [select for diffs]
Modified Mon Oct 10 19:33:39 2011 UTC (7 years, 10 months ago) by gpertea
File length: 41090 byte(s)
Diff to previous 102 , to selected 172
wip

Revision 102 - (view) (annotate) - [select for diffs]
Modified Fri Oct 7 21:44:59 2011 UTC (7 years, 10 months ago) by gpertea
File length: 38427 byte(s)
Diff to previous 98 , to selected 172
wip

Revision 98 - (view) (annotate) - [select for diffs]
Modified Thu Oct 6 20:49:00 2011 UTC (7 years, 10 months ago) by gpertea
File length: 46629 byte(s)
Diff to previous 94 , to selected 172
wip

Revision 94 - (view) (annotate) - [select for diffs]
Modified Tue Oct 4 21:27:35 2011 UTC (7 years, 10 months ago) by gpertea
File length: 48809 byte(s)
Diff to previous 88 , to selected 172
wip

Revision 88 - (view) (annotate) - [select for diffs]
Modified Mon Oct 3 16:34:03 2011 UTC (7 years, 10 months ago) by gpertea
File length: 54110 byte(s)
Diff to previous 76 , to selected 172
starting to add polyA/T trimming

Revision 76 - (view) (annotate) - [select for diffs]
Modified Tue Sep 27 12:37:02 2011 UTC (7 years, 10 months ago) by gpertea
File length: 53160 byte(s)
Diff to previous 13 , to selected 172
u

Revision 13 - (view) (annotate) - [select for diffs]
Modified Mon Jul 18 20:35:43 2011 UTC (8 years, 1 month ago) by gpertea
File length: 52599 byte(s)
Diff to previous 12 , to selected 172
sync with my local source

Revision 12 - (view) (annotate) - [select for diffs]
Modified Wed Jan 26 19:05:05 2011 UTC (8 years, 7 months ago) by gpertea
File length: 41915 byte(s)
Diff to previous 11 , to selected 172
added qv-threshold trimming

Revision 11 - (view) (annotate) - [select for diffs]
Modified Tue Mar 23 18:03:12 2010 UTC (9 years, 5 months ago) by gpertea
File length: 24503 byte(s)
Diff to previous 10 , to selected 172
update l5,l3 to defaults if no trimming is performed

Revision 10 - (view) (annotate) - [select for diffs]
Modified Tue Mar 23 17:46:56 2010 UTC (9 years, 5 months ago) by gpertea
File length: 24465 byte(s)
Diff to previous 9 , to selected 172
bugfix: prevent crash with -o option is not given

Revision 9 - (view) (annotate) - [select for diffs]
Modified Tue Mar 23 17:12:14 2010 UTC (9 years, 5 months ago) by gpertea
File length: 24432 byte(s)
Diff to previous 4 , to selected 172
fixed bug causing overtrimming

Revision 4 - (view) (annotate) - [select for diffs]
Added Mon Mar 22 22:05:23 2010 UTC (9 years, 5 months ago) by gpertea
File length: 23716 byte(s)
Diff to selected 172
initial commit

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, enter a numeric revision.

  Diffs between and
  Type of Diff should be a