Revision
144 -
Directory Listing
Modified
Thu Dec 22 19:15:46 2011 UTC
(9 years, 2 months ago)
by
gpertea
added GBitVec.h; removed operator> requirement for sorted vectors; swap() is now template Gswap()
Revision
133 -
Directory Listing
Modified
Fri Dec 9 15:59:14 2011 UTC
(9 years, 2 months ago)
by
gpertea
TODO: detect sam/bam input for samopen
Revision
132 -
Directory Listing
Modified
Thu Dec 8 02:53:32 2011 UTC
(9 years, 2 months ago)
by
gpertea
GBam working; fixed serious memory leak in GVec::setCapacity()
Revision
130 -
Directory Listing
Modified
Thu Dec 8 01:18:08 2011 UTC
(9 years, 2 months ago)
by
gpertea
fixed exon positions
Revision
129 -
Directory Listing
Modified
Wed Dec 7 20:59:43 2011 UTC
(9 years, 2 months ago)
by
gpertea
Revision
127 -
Directory Listing
Modified
Wed Dec 7 18:31:56 2011 UTC
(9 years, 2 months ago)
by
gpertea
Revision
126 -
Directory Listing
Modified
Tue Dec 6 22:45:06 2011 UTC
(9 years, 2 months ago)
by
gpertea
wip
Revision
124 -
Directory Listing
Modified
Tue Dec 6 04:54:35 2011 UTC
(9 years, 2 months ago)
by
gpertea
GBam wip
Revision
121 -
Directory Listing
Modified
Mon Dec 5 22:18:48 2011 UTC
(9 years, 2 months ago)
by
gpertea
added GBam BAM reader/writer classes (wip)
Revision
115 -
Directory Listing
Modified
Mon Nov 7 21:25:03 2011 UTC
(9 years, 3 months ago)
by
gpertea
fixed horrendous bug in GList.hh (resizing GVec)
Revision
109 -
Directory Listing
Modified
Tue Oct 11 19:50:14 2011 UTC
(9 years, 4 months ago)
by
gpertea
added GStr::reverse(), GAlnExtend stringency tweaks
Revision
107 -
Directory Listing
Modified
Tue Oct 11 12:31:50 2011 UTC
(9 years, 4 months ago)
by
gpertea
wip GYarn (threads)
Revision
106 -
Directory Listing
Modified
Mon Oct 10 21:45:05 2011 UTC
(9 years, 4 months ago)
by
gpertea
Revision
104 -
Directory Listing
Modified
Mon Oct 10 19:34:20 2011 UTC
(9 years, 4 months ago)
by
gpertea
fixed GVec, GArray to use new[] instead of malloc
Revision
101 -
Directory Listing
Modified
Fri Oct 7 21:13:55 2011 UTC
(9 years, 4 months ago)
by
gpertea
adjusting params
Revision
99 -
Directory Listing
Modified
Thu Oct 6 20:49:17 2011 UTC
(9 years, 4 months ago)
by
gpertea
wip
Revision
96 -
Directory Listing
Modified
Wed Oct 5 18:31:48 2011 UTC
(9 years, 4 months ago)
by
gpertea
moved match_LeftEnd() and match_RightEnd() to GAlnExtend
Revision
93 -
Directory Listing
Modified
Tue Oct 4 12:27:31 2011 UTC
(9 years, 5 months ago)
by
gpertea
added gapped alignment extension code
Revision
90 -
Directory Listing
Modified
Mon Oct 3 18:45:22 2011 UTC
(9 years, 5 months ago)
by
gpertea
reverseChars() minor edit
Revision
66 -
Directory Listing
Modified
Fri Sep 16 18:33:54 2011 UTC
(9 years, 5 months ago)
by
gpertea
made some Flybase GFF3 "errors" non-fatal
Revision
63 -
Directory Listing
Modified
Fri Sep 9 20:19:21 2011 UTC
(9 years, 5 months ago)
by
gpertea
Revision
60 -
Directory Listing
Modified
Fri Sep 9 18:00:55 2011 UTC
(9 years, 5 months ago)
by
gpertea
made sure Swap (Exchange) is available for GList, GVec
Revision
55 -
Directory Listing
Modified
Thu Sep 8 05:46:53 2011 UTC
(9 years, 5 months ago)
by
gpertea
RPS20P29, ENSG00000241828 not collapsing
Revision
51 -
Directory Listing
Modified
Thu Sep 8 01:02:11 2011 UTC
(9 years, 5 months ago)
by
gpertea
fix direct CDS segment given as the only subfeature
Revision
50 -
Directory Listing
Modified
Thu Sep 8 00:47:22 2011 UTC
(9 years, 5 months ago)
by
gpertea
fixed a loading bug when a CDS was given to a monoFeature() with a self-exon
Revision
41 -
Directory Listing
Modified
Sat Aug 27 16:58:00 2011 UTC
(9 years, 6 months ago)
by
gpertea
added fix for fileExists() under MSVC
Revision
36 -
Directory Listing
Modified
Mon Aug 22 15:56:21 2011 UTC
(9 years, 6 months ago)
by
gpertea
Revision
18 -
Directory Listing
Modified
Mon Jul 18 21:00:21 2011 UTC
(9 years, 7 months ago)
by
gpertea
added a few more source files, test code
Revision
16 -
Directory Listing
Modified
Mon Jul 18 20:56:02 2011 UTC
(9 years, 7 months ago)
by
gpertea
sync with local source
Revision
2 -
Directory Listing
Modified
Mon Mar 22 22:03:27 2010 UTC
(10 years, 11 months ago)
by
gpertea
added my gclib source files
Revision
1 -
Directory Listing
Added
Mon Mar 22 22:01:50 2010 UTC
(10 years, 11 months ago)
by
gpertea
import