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Revision 193 - Directory Listing
Modified Fri Feb 17 23:44:04 2012 UTC (7 years, 6 months ago) by gpertea

Revision 191 - Directory Listing
Modified Fri Feb 17 23:33:25 2012 UTC (7 years, 6 months ago) by gpertea

Revision 188 - Directory Listing
Modified Fri Feb 17 05:42:37 2012 UTC (7 years, 6 months ago) by gpertea
fqtrim works

Revision 186 - Directory Listing
Modified Thu Feb 16 22:15:58 2012 UTC (7 years, 6 months ago) by gpertea
adjust safelen threshold from 12 to 16

Revision 184 - Directory Listing
Modified Thu Feb 16 21:59:44 2012 UTC (7 years, 6 months ago) by gpertea
works

Revision 181 - Directory Listing
Modified Thu Feb 16 21:24:29 2012 UTC (7 years, 6 months ago) by gpertea
fqtrim works

Revision 179 - Directory Listing
Modified Thu Feb 16 16:23:45 2012 UTC (7 years, 6 months ago) by gpertea
moved bit handling inlines from GBase to GBitVec

Revision 178 - Directory Listing
Modified Thu Feb 16 07:10:45 2012 UTC (7 years, 6 months ago) by gpertea
fqtrim

Revision 176 - Directory Listing
Modified Thu Feb 16 03:47:16 2012 UTC (7 years, 6 months ago) by gpertea
fqtrim reworked

Revision 174 - Directory Listing
Modified Wed Feb 15 21:04:38 2012 UTC (7 years, 6 months ago) by gpertea
wip fqtrim

Revision 173 - Directory Listing
Modified Wed Feb 15 03:34:29 2012 UTC (7 years, 6 months ago) by gpertea
wip fqtrim

Revision 171 - Directory Listing
Modified Tue Feb 14 22:36:26 2012 UTC (7 years, 6 months ago) by gpertea
wip fqtrim

Revision 156 - Directory Listing
Modified Fri Jan 27 18:29:55 2012 UTC (7 years, 6 months ago) by gpertea
adding refactored TinyThread++ code

Revision 153 - Directory Listing
Modified Fri Jan 20 22:35:32 2012 UTC (7 years, 6 months ago) by gpertea
still working on trans-splicing/fusions in gff

Revision 152 - Directory Listing
Modified Fri Jan 13 23:08:23 2012 UTC (7 years, 7 months ago) by gpertea
wip

Revision 151 - Directory Listing
Modified Fri Jan 13 22:56:48 2012 UTC (7 years, 7 months ago) by gpertea
wip: trans-spliced and fusion transcripts

Revision 150 - Directory Listing
Modified Fri Jan 13 17:20:39 2012 UTC (7 years, 7 months ago) by gpertea
fixed parsing bug for extractAttr(); 
Gstrcmp() and Gstricmp() take a 3rd optional param to make them work like strncmp()

Revision 144 - Directory Listing
Modified Thu Dec 22 19:15:46 2011 UTC (7 years, 7 months ago) by gpertea
added GBitVec.h; removed operator> requirement for sorted vectors; swap() is now template Gswap()

Revision 133 - Directory Listing
Modified Fri Dec 9 15:59:14 2011 UTC (7 years, 8 months ago) by gpertea
TODO: detect sam/bam input for samopen

Revision 132 - Directory Listing
Modified Thu Dec 8 02:53:32 2011 UTC (7 years, 8 months ago) by gpertea
GBam working; fixed serious memory leak in GVec::setCapacity()

Revision 130 - Directory Listing
Modified Thu Dec 8 01:18:08 2011 UTC (7 years, 8 months ago) by gpertea
fixed exon positions

Revision 129 - Directory Listing
Modified Wed Dec 7 20:59:43 2011 UTC (7 years, 8 months ago) by gpertea

Revision 127 - Directory Listing
Modified Wed Dec 7 18:31:56 2011 UTC (7 years, 8 months ago) by gpertea

Revision 126 - Directory Listing
Modified Tue Dec 6 22:45:06 2011 UTC (7 years, 8 months ago) by gpertea
wip


Revision 124 - Directory Listing
Modified Tue Dec 6 04:54:35 2011 UTC (7 years, 8 months ago) by gpertea
GBam wip

Revision 121 - Directory Listing
Modified Mon Dec 5 22:18:48 2011 UTC (7 years, 8 months ago) by gpertea
added GBam BAM reader/writer classes (wip)

Revision 115 - Directory Listing
Modified Mon Nov 7 21:25:03 2011 UTC (7 years, 9 months ago) by gpertea
fixed horrendous bug in GList.hh (resizing GVec)

Revision 109 - Directory Listing
Modified Tue Oct 11 19:50:14 2011 UTC (7 years, 10 months ago) by gpertea
added GStr::reverse(), GAlnExtend stringency tweaks

Revision 107 - Directory Listing
Modified Tue Oct 11 12:31:50 2011 UTC (7 years, 10 months ago) by gpertea
wip GYarn (threads)

Revision 106 - Directory Listing
Modified Mon Oct 10 21:45:05 2011 UTC (7 years, 10 months ago) by gpertea

Revision 104 - Directory Listing
Modified Mon Oct 10 19:34:20 2011 UTC (7 years, 10 months ago) by gpertea
fixed GVec, GArray to use new[] instead of malloc

Revision 101 - Directory Listing
Modified Fri Oct 7 21:13:55 2011 UTC (7 years, 10 months ago) by gpertea
adjusting params

Revision 99 - Directory Listing
Modified Thu Oct 6 20:49:17 2011 UTC (7 years, 10 months ago) by gpertea
wip

Revision 96 - Directory Listing
Modified Wed Oct 5 18:31:48 2011 UTC (7 years, 10 months ago) by gpertea
moved match_LeftEnd() and match_RightEnd() to GAlnExtend

Revision 93 - Directory Listing
Modified Tue Oct 4 12:27:31 2011 UTC (7 years, 10 months ago) by gpertea
added gapped alignment extension code

Revision 90 - Directory Listing
Modified Mon Oct 3 18:45:22 2011 UTC (7 years, 10 months ago) by gpertea
reverseChars() minor edit

Revision 66 - Directory Listing
Modified Fri Sep 16 18:33:54 2011 UTC (7 years, 11 months ago) by gpertea
made some Flybase GFF3 "errors" non-fatal

Revision 63 - Directory Listing
Modified Fri Sep 9 20:19:21 2011 UTC (7 years, 11 months ago) by gpertea

Revision 60 - Directory Listing
Modified Fri Sep 9 18:00:55 2011 UTC (7 years, 11 months ago) by gpertea
made sure Swap (Exchange) is available for GList, GVec

Revision 55 - Directory Listing
Modified Thu Sep 8 05:46:53 2011 UTC (7 years, 11 months ago) by gpertea
RPS20P29, ENSG00000241828 not collapsing

Revision 51 - Directory Listing
Modified Thu Sep 8 01:02:11 2011 UTC (7 years, 11 months ago) by gpertea
fix direct CDS segment given as the only subfeature

Revision 50 - Directory Listing
Modified Thu Sep 8 00:47:22 2011 UTC (7 years, 11 months ago) by gpertea
fixed a loading bug when a CDS was given to a monoFeature() with a self-exon

Revision 41 - Directory Listing
Modified Sat Aug 27 16:58:00 2011 UTC (7 years, 11 months ago) by gpertea
added fix for fileExists() under MSVC

Revision 36 - Directory Listing
Modified Mon Aug 22 15:56:21 2011 UTC (7 years, 11 months ago) by gpertea

Revision 18 - Directory Listing
Modified Mon Jul 18 21:00:21 2011 UTC (8 years, 1 month ago) by gpertea
added a few more source files, test code

Revision 16 - Directory Listing
Modified Mon Jul 18 20:56:02 2011 UTC (8 years, 1 month ago) by gpertea
sync with local source

Revision 2 - Directory Listing
Modified Mon Mar 22 22:03:27 2010 UTC (9 years, 4 months ago) by gpertea
added my gclib source files

Revision 1 - Directory Listing
Added Mon Mar 22 22:01:50 2010 UTC (9 years, 4 months ago) by gpertea
import